SMTL ID : 5szi.1

Structure of human Rab8a in complex with the bMERB domain of Mical-cL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 23 residues within 4Å: Chain A: D.18, S.19, G.20, V.21, G.22, K.23, T.24, C.25, F.35, N.36, S.37, F.39, I.40, S.41, T.42, G.68, N.123, K.124, D.126, S.153, A.154, K.155 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.19, A:G.20, A:V.21, A:G.22, A:K.23, A:K.23, A:T.24, A:T.24, A:C.25, A:N.36, A:T.42, A:G.68, A:N.123, A:K.124, A:K.124, A:A.154, A:K.155 Water bridges: A:T.42 Salt bridges: A:D.126 pi-Stacking: A:F.35, A:F.35

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.24, T.42 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.24, A:T.42, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rai, A. et al., bMERB domains are bivalent Rab8 family effectors evolved by gene duplication. Elife (2016)

Release Date

2016-08-24

Peptides

Ras-related protein Rab-8A: A
MICAL C-terminal-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-8A

MICAL C-terminal-like protein

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