SMTL ID : 5szj.1

Structure of human Rab10 in complex with the bMERB domain of Mical-cL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 24 residues within 4Å: Chain A: S.20, G.21, V.22, G.23, K.24, T.25, C.26, F.36, N.37, T.38, F.40, S.42, T.43, T.67, A.68, G.69, N.124, K.125, D.127, M.128, S.154, A.155, K.156 Ligands: MG.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:G.21, A:V.22, A:G.23, A:K.24, A:K.24, A:K.24, A:T.25, A:C.26, A:N.37, A:T.43, A:T.43, A:T.43, A:T.67, A:G.69, A:N.124, A:K.125, A:K.125, A:A.155, A:K.156 Water bridges: A:T.25, A:I.41, A:Q.70, A:Q.70 Salt bridges: A:D.127 pi-Stacking: A:F.36, A:F.36

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.25, T.43, D.66 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.25, A:T.43, H2O.1, H2O.1

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: K.49 Chain B: E.87, Q.90, S.91, E.94, R.130 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.94, A:K.49, A:K.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rai, A. et al., bMERB domains are bivalent Rab8 family effectors evolved by gene duplication. Elife (2016)

Release Date

2016-08-24

Peptides

Ras-related protein Rab-10: A
MICAL C-terminal-like protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-10

MICAL C-terminal-like protein

Related Entries With Identical Sequence