SMTL ID : 5t0b.1

Crystal structure of H6 hemagglutinin G225D mutant from Taiwan (2013) H6N1 influenza virus in complex with 6'-SLN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA.1: 13 residues within 4Å: Chain A: Y.95, R.133, V.135, T.136, N.137, W.154, V.156, H.185, V.192, L.196, D.227, Q.228, S.230 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.227, A:Y.95, A:V.135, A:T.136, A:N.137, A:Q.228, A:Q.228, A:S.230, A:S.230 Hydrophobic interactions: A:V.156 Water bridges: A:V.135, A:S.146

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: Q.19, V.20, D.21, N.27 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.27 Water bridges: A:Q.19 NAG.3: 3 residues within 4Å: Chain A: N.171, T.173, T.244 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.244 Hydrogen bonds: A:N.171, A:T.244, A:T.244 NAG.4: 1 residues within 4Å: Chain E: N.15 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain E: N.171, T.244 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.171, E:T.244, E:T.244 NAG.6: 3 residues within 4Å: Chain F: E.147, S.151, N.154 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:N.154 Hydrogen bonds: F:E.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.P. et al., A single mutation in Taiwanese H6N1 influenza hemagglutinin switches binding to human-type receptors. EMBO Mol Med (2017)

Release Date

2017-06-14

Peptides

Hemagglutinin: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin HA2 chain

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