SMTL ID : 5t1d.1

Crystal structure of EBV gHgL/gp42/E1D1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.41, E.44, D.45, S.48 Chain B: Q.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.10 NAG-NAG.2: 3 residues within 4Å: Chain B: N.30, Q.31, S.94 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sathiyamoorthy, K. et al., Structural basis for Epstein-Barr virus host cell tropism mediated by gp42 and gHgL entry glycoproteins. Nat Commun (2016)

Release Date

2016-12-28

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Glycoprotein 42: C
E1D1 IgG2a heavy chain: D
E1D1 IgG2a light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

E
L

Envelope glycoprotein H

Envelope glycoprotein L

Glycoprotein 42

E1D1 IgG2a heavy chain

E1D1 IgG2a light chain

Related Entries With Identical Sequence