SMTL ID : 5t1f.1

Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase mutant Asn56Ala

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: V.13, G.14, G.16, G.17, T.18, I.19, L.40, D.41, A.42, S.47, Q.49, S.50, A.51, G.52, K.57, I.58, G.184, S.185, F.186, A.215, A.216, G.217, W.219, L.223, W.235, C.343, C.345, D.370, G.372, H.373, S.374, F.375, K.376 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:W.235 Hydrogen bonds: A:G.14, A:G.16, A:T.18, A:T.18, A:I.19, A:A.42, A:S.47, A:S.47, A:Q.49, A:S.50, A:A.51, A:G.52, A:K.57, A:I.58, A:I.58, A:F.186, A:F.186, A:D.370, A:G.372, A:H.373, A:S.374, A:F.375, A:K.376, A:K.376 Water bridges: A:G.17, A:G.20, A:G.217, A:G.217, A:A.218 pi-Cation interactions: A:K.57, A:K.57

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 4 residues within 4Å: Chain A: H.26, R.29, S.30, K.383 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.30 Salt bridges: A:H.26, A:K.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimasaki, T. et al., X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction. Sci Rep (2017)

Release Date

2017-06-28

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

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