SMTL ID : 5xao.2 (1 other biounit)

Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase mutant Asn56Ala in complexes with sodium and chloride ions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 33 residues within 4Å: Chain A: V.13, G.14, G.16, G.17, T.18, I.19, D.41, A.42, S.47, Q.49, S.50, A.51, G.52, K.57, I.58, G.184, S.185, F.186, A.215, A.216, G.217, W.219, L.223, W.235, C.343, C.345, D.370, G.372, H.373, S.374, F.375, K.376 Ligands: ACY.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:W.235 Hydrogen bonds: A:G.14, A:G.16, A:T.18, A:T.18, A:I.19, A:A.42, A:S.47, A:S.47, A:Q.49, A:S.50, A:A.51, A:G.52, A:K.57, A:I.58, A:I.58, A:F.186, A:F.186, A:D.370, A:G.372, A:S.374, A:F.375, A:K.376, A:K.376 Water bridges: A:G.17, A:G.20, A:G.217, A:G.217, A:A.218 pi-Cation interactions: A:K.57

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 4 residues within 4Å: Chain A: W.235, G.372, R.415 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.235 Water bridges: A:W.235, A:E.278, A:E.278, A:R.415 Salt bridges: A:R.415

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: E.246, R.249, Q.331, F.332 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.284, R.303, H.308 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: P.137, L.138, L.139 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.137 NA.6: 2 residues within 4Å: Chain A: S.48, N.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimasaki, T. et al., X-ray structures of fructosyl peptide oxidases revealing residues responsible for gating oxygen access in the oxidative half reaction. Sci Rep (2017)

Release Date

2017-06-28

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Uncharacterized protein

Related Entries With Identical Sequence