SMTL ID : 5t1u.1

Aminomethyl-Derived Beta Secretase (BACE1) Inhibitors: Engaging Gly230 without an Anilide Functionality

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x P6U: (4S)-4-[2,4-difluoro-5-({[1-(trifluoromethyl)cyclopropyl]amino}methyl)phenyl]-4-methyl-5,6-dihydro-4H-1,3-thiazin-2-amine(Non-covalent)

P6U.1: 17 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, Y.87, F.124, I.126, W.131, I.134, D.244, S.245, G.246, T.247, T.248 Ligands: EDO.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.87, A:Y.87, A:F.124, A:I.126, A:I.134 Hydrogen bonds: A:D.244, A:G.246, A:T.247

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: H.61, E.120, S.121 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: H.61, K.123 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: R.365, R.367 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 13 residues within 4Å: Chain A: K.25, S.26, G.27, Q.28, G.29, Y.30, V.186, T.247, T.248, R.323, A.351, E.355 Ligands: P6U.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.25, A:G.27, A:G.29 EDO.6: 3 residues within 4Å: Chain A: R.66, Y.67, Q.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.67, A:Y.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Butler, C.R. et al., Aminomethyl-Derived Beta Secretase (BACE1) Inhibitors: Engaging Gly230 without an Anilide Functionality. J. Med. Chem. (2017)

Release Date

2017-01-11

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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