SMTL ID : 5t3g.1

thaumatin soaked with selenourea for 10 min

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

13 x SEY: selenourea(Non-covalent)

SEY.1: 4 residues within 4Å: Chain A: L.24, D.25, N.40, E.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.25, A:N.40 SEY.2: 1 residues within 4Å: Chain A: T.160 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.153 SEY.3: 4 residues within 4Å: Chain A: Q.133, F.172, R.175, L.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.175, A:R.175 SEY.4: 5 residues within 4Å: Chain A: R.8, N.113, R.125, T.202, P.205 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.113, A:R.125, A:T.202 Water bridges: A:R.8, A:N.113, A:S.115, A:T.202 SEY.5: 5 residues within 4Å: Chain A: K.97, G.120, T.192, C.193, P.194 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.120 SEY.6: 5 residues within 4Å: Chain A: F.58, D.59, D.60 Ligands: SEY.7, SEY.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.58, A:D.60 SEY.7: 6 residues within 4Å: Chain A: W.14, Q.30, F.58, L.75 Ligands: SEY.6, SEY.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.30 SEY.8: 6 residues within 4Å: Chain A: W.14, C.56, Y.57, F.58 Ligands: SEY.6, SEY.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.58, A:F.58 SEY.9: 1 residues within 4Å: Chain A: Y.95 No protein-ligand interaction detected (PLIP) SEY.10: 4 residues within 4Å: Chain A: C.9, S.10, Y.11, C.204 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.10 SEY.11: 3 residues within 4Å: Chain A: F.80, G.81, K.106 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.81, A:G.81, A:G.81 SEY.12: 4 residues within 4Å: Chain A: A.1, N.40, V.41, E.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.1, A:V.41 SEY.13: 2 residues within 4Å: Chain A: E.168, R.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.168, A:R.171, A:R.171

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.14: 3 residues within 4Å: Chain A: R.29, E.35, S.36 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.29, A:R.29, A:E.35, A:E.35, A:S.36 Salt bridges: A:R.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, Z., Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures. Sci Rep (2016)

Release Date

2016-11-30

Peptides

Thaumatin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thaumatin-1

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