SMTL ID : 5t7i.1

Crystal structure of galectin-8N in complex with LNnT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG-GAL.1: 12 residues within 4Å: Chain A: R.45, Q.47, D.49, V.56, R.59, H.65, N.67, R.69, N.79, W.86, E.89, Y.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.69, A:R.69, A:R.59, A:R.45, A:Q.47, A:D.49 Water bridges: A:E.89, A:E.89, A:Q.47, A:Q.47, A:G.142, A:D.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bohari, M.H. et al., Structure-based rationale for differential recognition of lacto- and neolacto- series glycosphingolipids by the N-terminal domain of human galectin-8. Sci Rep (2016)

Release Date

2017-01-04

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-8

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