SMTL ID : 5tde.1

TEV Cleaved Human ATP Citrate Lyase Bound to Citrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 16 residues within 4Å: Chain A: A.280, G.281, S.308, G.309, A.310, S.343, A.345, N.346, F.347, T.348, R.379 Chain B: V.140, G.178, G.179 Ligands: NA.3, 2HP.7 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.347 Hydrogen bonds: A:G.309, A:A.310, A:N.346, A:N.346, A:F.347, A:T.348, A:T.348, A:T.348, A:T.348 Salt bridges: A:R.379 Water bridges: B:G.178

3 x 2HP: DIHYDROGENPHOSPHATE ION(Non-covalent)

2HP.2: 8 residues within 4Å: Chain A: K.64, R.65, R.66, G.67, N.203, D.216, A.218 Ligands: GOL.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.65, A:R.66, A:N.203 Water bridges: A:I.63, A:G.67 Salt bridges: A:R.66 2HP.7: 12 residues within 4Å: Chain A: G.281, G.282, G.283, A.284, S.308 Chain B: S.177, G.178, G.179, M.180, H.274 Ligands: FLC.1, NA.3 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.177, B:G.178, B:G.179, A:G.282, A:G.283 Water bridges: B:M.180, A:A.284 Salt bridges: B:H.274 2HP.8: 3 residues within 4Å: Chain B: Y.31, G.58, H.59 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.31, B:H.59 Water bridges: B:K.60 Salt bridges: B:H.59

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: S.263, G.281, G.282, S.308 Ligands: FLC.1, 2HP.7 No protein-ligand interaction detected (PLIP) NA.4: 5 residues within 4Å: Chain A: D.257, S.260, G.261, A.262, S.263 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.260

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 11 residues within 4Å: Chain A: E.8, V.56, K.58, R.66, G.67, V.72, N.203, P.204, L.215, D.216 Ligands: 2HP.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.8, A:K.58, A:L.215 Water bridges: A:G.67 GOL.6: 6 residues within 4Å: Chain A: Q.9, Y.31, A.32, R.33, L.43, H.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.33, A:H.47, A:H.47 Water bridges: A:R.33 GOL.9: 9 residues within 4Å: Chain A: H.410, M.411 Chain B: I.187, F.304, D.305, E.306, L.307, G.308, E.309 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.305, B:L.307, B:G.308, A:M.411 GOL.10: 7 residues within 4Å: Chain B: W.257, N.290, Q.291, K.294, V.300, P.301, R.302 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.291, B:K.294 Water bridges: B:N.290, B:Q.291, B:R.302, B:R.302, B:R.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, J. et al., Binding of hydroxycitrate to human ATP-citrate lyase. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-08-09

Peptides

ATP-citrate synthase: A
ATP-citrate synthase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP-citrate synthase

ATP-citrate synthase

Related Entries With Identical Sequence