- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x 7FN: 2,5 Furan Dicarboxylic Acid(Non-covalent)
7FN.2: 10 residues within 4Å:- Chain A: T.100, P.123, H.155, H.156, K.159, S.164, G.165, T.166, R.236
- Ligands: NAD.1
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:G.165, A:T.166, A:T.166, A:T.166, A:R.236
- Salt bridges: A:H.155, A:H.155, A:H.156, A:K.159, A:K.159
- pi-Cation interactions: A:H.155
7FN.6: 9 residues within 4Å:- Chain B: T.100, P.123, H.155, H.156, K.159, S.164, G.165, T.166
- Ligands: NAD.5
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:G.165, B:T.166, B:T.166, B:T.166
- Water bridges: B:H.156, B:V.213, B:R.236
- Salt bridges: B:H.155, B:H.155, B:H.156, B:K.159, B:K.159
- pi-Cation interactions: B:H.155
7FN.11: 9 residues within 4Å:- Chain C: T.100, P.123, H.155, H.156, K.159, S.164, G.165, T.166
- Ligands: NAD.10
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:T.100, C:T.100, C:G.165, C:T.166
- Salt bridges: C:H.155, C:H.155, C:H.156, C:K.159, C:K.159
- pi-Cation interactions: C:H.155
7FN.15: 9 residues within 4Å:- Chain D: T.100, P.123, H.155, H.156, K.159, S.164, G.165, T.166
- Ligands: NAD.14
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:T.100, D:T.100, D:G.165, D:T.166
- Water bridges: D:R.236, D:R.236
- Salt bridges: D:H.155, D:H.155, D:H.156, D:K.159, D:K.159
- pi-Cation interactions: D:H.155
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 8 residues within 4Å:- Chain A: D.211, I.212, V.213, G.214, A.233, T.234
- Chain B: R.226
- Chain C: T.234
5 PLIP interactions:2 interactions with chain B, 2 interactions with chain A, 1 interactions with chain C- Water bridges: B:R.226
- Salt bridges: B:R.226
- Hydrogen bonds: A:V.213, A:G.214, C:T.234
SO4.4: 3 residues within 4Å:- Chain A: R.12, N.16, R.236
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.16, A:N.16
- Salt bridges: A:R.236
SO4.7: 2 residues within 4Å:- Chain B: N.16, R.236
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.16
- Salt bridges: B:R.236
SO4.8: 3 residues within 4Å:- Chain B: T.198, K.199, D.200
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.199, B:D.200, B:D.200, B:D.200
SO4.9: 1 residues within 4Å:- Chain B: P.254
No protein-ligand interaction detected (PLIP)SO4.12: 6 residues within 4Å:- Chain C: A.21, H.22, A.27, K.28, V.29, F.54
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:V.29
- Salt bridges: C:H.22
SO4.13: 6 residues within 4Å:- Chain C: T.100, G.101, F.102, R.107, M.121, G.165
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.101, C:F.102
- Salt bridges: C:R.107
SO4.16: 6 residues within 4Å:- Chain D: T.100, G.101, F.102, R.107, G.165, I.168
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.101, D:F.102
- Water bridges: D:D.161, D:G.165
- Salt bridges: D:R.107
SO4.17: 2 residues within 4Å:- Chain D: N.16, R.236
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:N.16, D:N.16
- Water bridges: D:R.15, D:R.15, D:D.235, D:R.236
- Salt bridges: D:R.236
SO4.18: 4 residues within 4Å:- Chain A: I.223
- Chain D: M.237, T.238, N.241
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.241
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pote, S. et al., Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus. Biochim Biophys Acta Gen Subj (2021)
- Release Date
- 2017-10-18
- Peptides
- 4-hydroxy-tetrahydrodipicolinate reductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x 7FN: 2,5 Furan Dicarboxylic Acid(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pote, S. et al., Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus. Biochim Biophys Acta Gen Subj (2021)
- Release Date
- 2017-10-18
- Peptides
- 4-hydroxy-tetrahydrodipicolinate reductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H