SMTL ID : 5tgc.3 (2 other biounits)

Structure of the hetero-trimer of Rtt102-Arp7/9 bound to ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 23 residues within 4Å: Chain A: H.12, G.14, S.15, H.16, R.17, S.34, E.142, D.159, G.161, A.162, S.163, N.166, G.187, D.191, Q.230, K.233, S.234, G.397, S.398, T.399, L.401, I.402, K.434 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.15, A:S.15, A:H.16, A:R.17, A:R.17, A:D.159, A:A.162, A:D.191, A:K.233, A:S.398, A:S.398, A:T.399, A:K.434 ATP.4: 21 residues within 4Å: Chain D: H.12, G.14, S.15, H.16, R.17, G.161, A.162, S.163, N.166, G.187, D.188, D.191, Q.230, K.233, S.234, G.397, S.398, T.399, L.401, I.402, K.434 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:H.12, D:S.15, D:H.16, D:R.17, D:E.142, D:D.159, D:A.162, D:Q.230, D:K.233, D:S.398, D:S.398, D:K.434, D:K.434

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain B: S.16, Q.17, N.70, G.71, G.165, T.166, H.167, H.168 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.16, B:S.16, B:Q.17, B:N.70, B:T.166, B:H.167, B:H.168 Salt bridges: B:H.168 SO4.3: 5 residues within 4Å: Chain B: R.15, G.337, G.423, Y.424, S.425 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.424, B:S.425, B:S.425 Salt bridges: B:R.15 SO4.5: 8 residues within 4Å: Chain E: S.16, Q.17, N.70, G.71, G.165, T.166, H.167, H.168 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:S.16, E:S.16, E:Q.17, E:T.166, E:T.166, E:H.167, E:H.168 Salt bridges: E:H.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turegun, B. et al., Actin-related proteins regulate the RSC chromatin remodeler by weakening intramolecular interactions of the Sth1 ATPase. Commun Biol (2018)

Release Date

2017-09-06

Peptides

Actin-related protein 7: AD
Actin-like protein ARP9: BE
Regulator of Ty1 transposition protein 102: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

Actin-related protein 7

Actin-like protein ARP9

Regulator of Ty1 transposition protein 102

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