SMTL ID : 5th9.3 (2 other biounits)

Structure determination of a potent, selective antibody inhibitor of human MMP9 (GS-5745 bound to MMP-9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.62, H.189, H.193, H.199 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.62, C:H.189, C:H.193, C:H.199 ZN.2: 4 residues within 4Å: Chain C: H.138, D.140, H.153, H.166 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.138, C:D.140, C:D.140, C:H.153

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain B: Y.99 Chain C: A.127, D.128, G.158, G.160, Q.162, D.164 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.128, C:G.160, C:Q.162, C:D.164 CA.4: 6 residues within 4Å: Chain C: D.145, G.146, D.148, L.150, D.168, E.171 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.145, C:G.146, C:D.148, C:L.150, C:E.171

1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)

NCO.5: 5 residues within 4Å: Chain C: S.92, D.94, D.169, D.170, E.171 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.94, C:D.169, C:D.169, C:D.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleby, T.C. et al., Biochemical characterization and structure determination of a potent, selective antibody inhibitor of human MMP9. J. Biol. Chem. (2017)

Release Date

2017-03-15

Peptides

GS-5745 Fab light chain: A
GS-5745 Fab heavy chain: B
Matrix metalloproteinase-9,Matrix metalloproteinase-9: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
N

B
J

C
C

GS-5745 Fab light chain

GS-5745 Fab heavy chain

Matrix metalloproteinase-9,Matrix metalloproteinase-9

Related Entries With Identical Sequence