- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: P.281, V.282, Y.317, L.346, E.347, I.348
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.346, A:I.348
EDO.6: 3 residues within 4Å:- Chain A: T.69, F.70, A.188
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.188
EDO.7: 2 residues within 4Å:- Chain A: V.61, S.63
1 PLIP interactions:1 interactions with chain A- Water bridges: A:M.64
EDO.8: 6 residues within 4Å:- Chain A: K.132, V.133, L.292, Q.295, L.296
- Ligands: EDO.12
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.295, A:Q.295, A:L.296
- Water bridges: A:L.296
EDO.9: 4 residues within 4Å:- Chain A: A.68, F.70, H.71, T.72
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.71
EDO.10: 3 residues within 4Å:- Chain A: K.374, H.375, V.376
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.374
EDO.11: 6 residues within 4Å:- Chain A: Y.317, T.326, L.327, S.329, L.346, E.347
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.327
EDO.12: 5 residues within 4Å:- Chain A: L.292, Q.293, V.321, I.322
- Ligands: EDO.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.321
EDO.13: 4 residues within 4Å:- Chain A: F.207, F.208, P.209, G.210
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.206
- Water bridges: A:F.207
EDO.14: 4 residues within 4Å:- Chain A: Q.236, D.237, T.280, P.350
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.236, A:D.237
- Water bridges: A:D.237, A:T.280, A:I.348
EDO.15: 7 residues within 4Å:- Chain A: Y.18, A.38, V.41, H.42, W.137, S.138
- Ligands: EDO.18
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.18, A:A.38, A:H.42
EDO.16: 9 residues within 4Å:- Chain A: W.141, H.142, H.143, G.151, C.153, G.303, G.304, Y.306
- Ligands: B3N.4
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.140, A:H.142
- Water bridges: A:Y.306
EDO.17: 8 residues within 4Å:- Chain A: Y.111, A.112, I.115, W.141, F.152, C.153, Y.154, L.155
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.112, A:F.152, A:Y.154, A:L.155
EDO.18: 6 residues within 4Å:- Chain A: R.37, A.38, W.137, S.138, W.315
- Ligands: EDO.15
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.37, A:A.38
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porter, N.J. et al., Structural and Functional Influence of the Glycine-Rich Loop G302GGGY on the Catalytic Tyrosine of Histone Deacetylase 8. Biochemistry (2016)
- Release Date
- 2016-12-21
- Peptides
- Histone deacetylase 8: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porter, N.J. et al., Structural and Functional Influence of the Glycine-Rich Loop G302GGGY on the Catalytic Tyrosine of Histone Deacetylase 8. Biochemistry (2016)
- Release Date
- 2016-12-21
- Peptides
- Histone deacetylase 8: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A