- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 2 residues within 4Å:- Chain A: L.163, A.188
No protein-ligand interaction detected (PLIP)EDO.6: 9 residues within 4Å:- Chain A: P.230, I.231, Q.232, N.357, E.358, R.361, I.362, I.365
- Ligands: EDO.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.232, A:E.358
EDO.7: 6 residues within 4Å:- Chain A: F.203, D.213, P.230, R.361, I.365
- Ligands: EDO.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.213, A:R.361
EDO.8: 6 residues within 4Å:- Chain A: G.206, F.207, F.208, P.209, G.210
- Ligands: EDO.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.206
EDO.9: 6 residues within 4Å:- Chain A: P.281, V.282, Y.317, L.346, E.347, I.348
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.346, A:I.348
EDO.10: 3 residues within 4Å:- Chain A: K.202, S.204, D.233
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.202, A:S.204, A:S.204
EDO.11: 2 residues within 4Å:- Chain A: E.65, A.68
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.65
- Water bridges: A:A.68
EDO.12: 4 residues within 4Å:- Chain A: V.214, S.215, Y.368, N.372
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.372, A:N.372
EDO.13: 6 residues within 4Å:- Chain A: Y.111, W.141, F.152, C.153, Y.154, L.155
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.154, A:L.155, A:L.155
EDO.14: 5 residues within 4Å:- Chain A: K.132, V.133, L.292, Q.295, L.296
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.295, A:L.296
- Water bridges: A:L.296
EDO.15: 4 residues within 4Å:- Chain A: S.150, F.208, P.209
- Ligands: EDO.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.150, A:S.150
EDO.16: 2 residues within 4Å:- Chain A: T.326, S.328
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.326
- Water bridges: A:S.328, A:S.329
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porter, N.J. et al., Structural and Functional Influence of the Glycine-Rich Loop G302GGGY on the Catalytic Tyrosine of Histone Deacetylase 8. Biochemistry (2016)
- Release Date
- 2016-12-21
- Peptides
- Histone deacetylase 8: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porter, N.J. et al., Structural and Functional Influence of the Glycine-Rich Loop G302GGGY on the Catalytic Tyrosine of Histone Deacetylase 8. Biochemistry (2016)
- Release Date
- 2016-12-21
- Peptides
- Histone deacetylase 8: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B