- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x BGC- FUC- XYP- RM4- 7CV- XXR- MAN- GLA- XYP: 6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose-(1-2)-beta-L-rhamnopyranose-(1-4)-beta-D-xylopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)-alpha-D-rhamnopyranose-(1-3)][alpha-D-galactopyranose-(1-2)]alpha-L-fucopyranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-glucopyranose
- 3 x BGC- FUC: alpha-L-fucopyranose-(1-3)-beta-D-glucopyranose(Post Translational Modification)
BGC-FUC.4: 3 residues within 4Å:- Chain A: D.388, N.405
- Ligands: BGC-FUC-XYP-RM4-7CV-XXR-MAN-GLA-XYP.1
No protein-ligand interaction detected (PLIP)BGC-FUC.10: 3 residues within 4Å:- Chain B: D.388, N.405
- Ligands: BGC-FUC-XYP-RM4-7CV-XXR-MAN-GLA-XYP.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.388
BGC-FUC.16: 3 residues within 4Å:- Chain C: D.388, N.405
- Ligands: BGC-FUC-XYP-RM4-7CV-XXR-MAN-GLA-XYP.13
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.388
- 6 x HG: MERCURY (II) ION(Non-covalent)
HG.5: 4 residues within 4Å:- Chain A: A.242, C.385, N.405, T.408
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:C.385, A:C.385
HG.6: 5 residues within 4Å:- Chain A: L.319, F.355, C.368, F.370, I.373
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:C.368
HG.11: 4 residues within 4Å:- Chain B: A.242, C.385, N.405, T.408
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:C.385, B:C.385
HG.12: 5 residues within 4Å:- Chain B: L.319, F.355, C.368, F.370, I.373
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:C.368
HG.17: 4 residues within 4Å:- Chain C: A.242, C.385, N.405, T.408
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:C.385, C:C.385
HG.18: 5 residues within 4Å:- Chain C: L.319, F.355, C.368, F.370, I.373
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:C.368
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- De Castro, C. et al., Structure of the chlorovirus PBCV-1 major capsid glycoprotein determined by combining crystallographic and carbohydrate molecular modeling approaches. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2017-10-18
- Peptides
- Major capsid protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x BGC- FUC- XYP- RM4- 7CV- XXR- MAN- GLA- XYP: 6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose-(1-2)-beta-L-rhamnopyranose-(1-4)-beta-D-xylopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)-alpha-D-rhamnopyranose-(1-3)][alpha-D-galactopyranose-(1-2)]alpha-L-fucopyranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-glucopyranose
- 3 x BGC- FUC: alpha-L-fucopyranose-(1-3)-beta-D-glucopyranose(Post Translational Modification)
- 6 x HG: MERCURY (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- De Castro, C. et al., Structure of the chlorovirus PBCV-1 major capsid glycoprotein determined by combining crystallographic and carbohydrate molecular modeling approaches. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2017-10-18
- Peptides
- Major capsid protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B