SMTL ID : 5tk3.1

Crystal structure of FBP aldolase from Toxoplasma gondii, burst-phase ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-tetramer

Ligands

4 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Covalent)

13P.1: 14 residues within 4Å: Chain A: A.32, D.34, I.77, K.107, K.146, K.231, L.272, S.273, G.274, S.301, Y.302, G.303, R.304 Ligands: G3H.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:A.32, A:K.231 Hydrogen bonds: A:D.34, A:K.146, A:S.273, A:S.273, A:G.274, A:G.303, A:R.304 Water bridges: A:R.43, A:R.148, A:K.231, A:R.304, A:R.304, A:R.304, A:R.304, A:R.304, A:R.304, A:R.304, A:R.304 Salt bridges: A:K.231, A:R.304 13P.4: 14 residues within 4Å: Chain B: A.32, D.34, I.77, K.107, K.146, K.231, L.272, S.273, G.274, S.301, Y.302, G.303, R.304 Ligands: G3H.5 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:A.32, B:K.231 Hydrogen bonds: B:D.34, B:K.146, B:S.273, B:S.273, B:G.274, B:G.303, B:R.304 Water bridges: B:R.43, B:R.148, B:K.231, B:R.304, B:R.304, B:R.304, B:R.304, B:R.304, B:R.304, B:R.304, B:R.304 Salt bridges: B:K.231, B:R.304 13P.7: 14 residues within 4Å: Chain C: A.32, D.34, I.77, K.107, K.146, K.231, L.272, S.273, G.274, S.301, Y.302, G.303, R.304 Ligands: G3H.8 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:A.32, C:K.231 Hydrogen bonds: C:D.34, C:K.146, C:K.231, C:S.273, C:S.273, C:G.274, C:G.303, C:R.304 Water bridges: C:R.43, C:R.148, C:R.304, C:R.304, C:R.304, C:R.304, C:R.304, C:R.304, C:R.304, C:R.304 Salt bridges: C:K.231, C:R.304 13P.10: 14 residues within 4Å: Chain D: A.32, D.34, I.77, K.107, K.146, K.231, L.272, S.273, G.274, S.301, Y.302, G.303, R.304 Ligands: G3H.11 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:A.32, D:K.231 Hydrogen bonds: D:D.34, D:K.146, D:K.231, D:S.273, D:S.273, D:G.274, D:G.303, D:R.304 Water bridges: D:R.43, D:R.148, D:R.304, D:R.304, D:R.304, D:R.304, D:R.304, D:R.304, D:R.304, D:R.304 Salt bridges: D:K.231, D:R.304

4 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)

G3H.2: 11 residues within 4Å: Chain A: D.34, E.35, S.36, T.39, K.107, K.146, R.148, E.189, K.231 Ligands: 13P.1, GOL.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.36, A:T.39, A:R.148 Water bridges: A:D.34, A:K.107, A:K.107, A:K.146, A:K.146, A:R.148, A:R.148, A:K.231, A:R.304, A:R.304 Salt bridges: A:K.107, A:K.146 G3H.5: 11 residues within 4Å: Chain B: D.34, E.35, S.36, T.39, K.107, K.146, R.148, E.189, K.231 Ligands: 13P.4, GOL.6 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:S.36, B:T.39, B:R.148 Water bridges: B:D.34, B:K.107, B:K.107, B:K.146, B:K.146, B:R.148, B:R.148, B:K.231, B:R.304, B:R.304 Salt bridges: B:K.107, B:K.146 G3H.8: 11 residues within 4Å: Chain C: D.34, E.35, S.36, T.39, K.107, K.146, R.148, E.189, K.231 Ligands: 13P.7, GOL.9 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:S.36, C:T.39, C:R.148, C:K.231 Water bridges: C:D.34, C:K.107, C:K.107, C:K.146, C:K.146, C:R.148, C:R.148, C:R.304, C:R.304 Salt bridges: C:K.107, C:K.146 G3H.11: 11 residues within 4Å: Chain D: D.34, E.35, S.36, T.39, K.107, K.146, R.148, E.189, K.231 Ligands: 13P.10, GOL.12 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:S.36, D:T.39, D:R.148, D:K.231 Water bridges: D:D.34, D:K.107, D:K.107, D:K.146, D:K.146, D:R.148, D:R.148, D:R.304, D:R.304 Salt bridges: D:K.107, D:K.146

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: D.34, E.35, S.36, T.39, K.107, K.146, R.148 Ligands: G3H.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.36, A:T.39, A:K.107, A:R.148 Water bridges: A:D.109, A:D.109, A:K.146, A:K.146, A:R.148 GOL.6: 8 residues within 4Å: Chain B: D.34, E.35, S.36, T.39, K.107, K.146, R.148 Ligands: G3H.5 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.36, B:T.39, B:K.107, B:R.148 Water bridges: B:D.109, B:D.109, B:K.146, B:K.146, B:R.148 GOL.9: 8 residues within 4Å: Chain C: D.34, E.35, S.36, T.39, K.107, K.146, R.148 Ligands: G3H.8 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.36, C:T.39, C:K.107, C:R.148 Water bridges: C:D.109, C:D.109, C:K.146, C:K.146, C:R.148 GOL.12: 8 residues within 4Å: Chain D: D.34, E.35, S.36, T.39, K.107, K.146, R.148 Ligands: G3H.11 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.36, D:T.39, D:K.107, D:R.148 Water bridges: D:D.109, D:D.109, D:K.146, D:K.146, D:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heron, P.W. et al., Isomer activation controls stereospecificity of class I fructose-1,6-bisphosphate aldolases. J. Biol. Chem. (2017)

Release Date

2017-10-04

Peptides

Fructose-bisphosphate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-bisphosphate aldolase

Related Entries With Identical Sequence