SMTL ID : 5tkp.1

Crystal structure of FBP aldolase from Toxoplasma gondii, equilibrium Schiff base FBP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-tetramer

Ligands

4 x P6F: 1,6-di-O-phosphono-D-fructose(Covalent)

P6F.1: 19 residues within 4Å: Chain A: A.32, D.34, E.35, S.36, T.39, I.77, K.107, K.146, R.148, E.189, K.231, L.272, S.273, G.274, S.301, Y.302, G.303, R.304, A.305 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:A.32, A:K.231 Hydrogen bonds: A:S.36, A:S.36, A:T.39, A:T.39, A:K.146, A:E.189, A:S.273, A:S.273, A:S.273, A:S.273, A:G.274, A:G.303, A:R.304 Water bridges: A:K.107, A:K.107, A:K.107, A:K.107, A:R.148, A:R.148, A:R.148, A:R.148, A:R.304 Salt bridges: A:K.107, A:K.146, A:K.231, A:R.304 P6F.2: 19 residues within 4Å: Chain B: A.32, D.34, E.35, S.36, T.39, I.77, K.107, K.146, R.148, E.189, K.231, L.272, S.273, G.274, S.301, Y.302, G.303, R.304, A.305 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:A.32, B:K.231 Hydrogen bonds: B:S.36, B:S.36, B:T.39, B:T.39, B:K.146, B:E.189, B:S.273, B:S.273, B:S.273, B:S.273, B:G.274, B:G.303, B:R.304 Water bridges: B:K.107, B:K.107, B:K.107, B:K.107, B:R.148, B:R.148, B:R.148, B:R.148, B:R.304 Salt bridges: B:K.107, B:K.146, B:K.231, B:R.304 P6F.3: 19 residues within 4Å: Chain C: A.32, D.34, E.35, S.36, T.39, I.77, K.107, K.146, R.148, E.189, K.231, L.272, S.273, G.274, S.301, Y.302, G.303, R.304, A.305 28 PLIP interactions: 28 interactions with chain C Hydrophobic interactions: C:A.32, C:K.231 Hydrogen bonds: C:S.36, C:S.36, C:T.39, C:T.39, C:K.146, C:E.189, C:S.273, C:S.273, C:S.273, C:S.273, C:G.274, C:G.303, C:R.304 Water bridges: C:K.107, C:K.107, C:K.107, C:K.107, C:R.148, C:R.148, C:R.148, C:R.148, C:R.304 Salt bridges: C:K.107, C:K.146, C:K.231, C:R.304 P6F.4: 19 residues within 4Å: Chain D: A.32, D.34, E.35, S.36, T.39, I.77, K.107, K.146, R.148, E.189, K.231, L.272, S.273, G.274, S.301, Y.302, G.303, R.304, A.305 28 PLIP interactions: 28 interactions with chain D Hydrophobic interactions: D:A.32, D:K.231 Hydrogen bonds: D:S.36, D:S.36, D:T.39, D:T.39, D:K.146, D:E.189, D:S.273, D:S.273, D:S.273, D:S.273, D:G.274, D:G.303, D:R.304 Water bridges: D:K.107, D:K.107, D:K.107, D:K.107, D:R.148, D:R.148, D:R.148, D:R.148, D:R.304 Salt bridges: D:K.107, D:K.146, D:K.231, D:R.304

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heron, P.W. et al., Isomer activation controls stereospecificity of class I fructose-1,6-bisphosphate aldolases. J. Biol. Chem. (2017)

Release Date

2017-10-04

Peptides

Fructose-bisphosphate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-bisphosphate aldolase

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