SMTL ID : 5tle.1

Fructose-1,6-bisphosphate aldolase from rabbit muscle in complex with the inhibitor 2-phosphate-naphthalene 6-bisphosphonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-tetramer

Ligands

4 x RD1: {[6-(phosphonooxy)naphthalen-2-yl]methylene}bis(phosphonic acid)(Non-covalent)

RD1.1: 17 residues within 4Å: Chain A: A.31, D.33, E.34, S.35, S.38, K.107, K.146, R.148, K.229, L.270, S.271, G.272, S.300, Y.301, G.302, R.303, A.304 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:A.31, A:E.34 Hydrogen bonds: A:S.35, A:S.35, A:S.38, A:K.229, A:S.271, A:S.271, A:S.271, A:G.272, A:G.302, A:R.303, A:R.303, A:R.303 Water bridges: A:K.107, A:K.107, A:K.107, A:K.146, A:R.148, A:R.148, A:E.187, A:A.304, A:A.304 Salt bridges: A:K.107 pi-Cation interactions: A:K.146, A:K.229 RD1.3: 17 residues within 4Å: Chain B: A.31, D.33, E.34, S.35, S.38, K.107, K.146, R.148, K.229, L.270, S.271, G.272, S.300, Y.301, G.302, R.303, A.304 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:A.31, B:E.34 Hydrogen bonds: B:S.35, B:S.35, B:S.38, B:K.229, B:S.271, B:S.271, B:G.272, B:G.302, B:R.303, B:R.303, B:R.303 Water bridges: B:K.107, B:K.107, B:K.107, B:K.146, B:R.148, B:E.187, B:A.304, B:A.304 Salt bridges: B:K.107 pi-Cation interactions: B:K.146, B:K.229 RD1.4: 18 residues within 4Å: Chain C: A.31, D.33, E.34, S.35, S.38, R.42, K.107, K.146, R.148, K.229, L.270, S.271, G.272, S.300, Y.301, G.302, R.303, A.304 28 PLIP interactions: 28 interactions with chain C Hydrophobic interactions: C:A.31 Hydrogen bonds: C:S.35, C:S.35, C:S.35, C:S.38, C:R.42, C:K.229, C:S.271, C:S.271, C:S.271, C:G.272, C:G.302, C:R.303, C:R.303, C:R.303 Water bridges: C:R.42, C:K.107, C:K.107, C:K.107, C:K.146, C:R.148, C:R.148, C:R.148, C:A.304, C:A.304 Salt bridges: C:K.107 pi-Cation interactions: C:K.146, C:K.229 RD1.6: 18 residues within 4Å: Chain D: A.31, D.33, E.34, S.35, S.38, R.42, K.107, K.146, R.148, K.229, L.270, S.271, G.272, S.300, Y.301, G.302, R.303, A.304 25 PLIP interactions: 25 interactions with chain D Hydrophobic interactions: D:A.31, D:E.34 Hydrogen bonds: D:S.35, D:S.35, D:S.38, D:K.229, D:S.271, D:S.271, D:S.271, D:G.272, D:G.302, D:R.303, D:R.303, D:R.303 Water bridges: D:K.107, D:K.107, D:K.107, D:R.148, D:R.148, D:E.187, D:A.304, D:A.304 Salt bridges: D:K.107 pi-Cation interactions: D:K.146, D:K.229

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: T.123, L.127, E.165, N.168, V.169, R.172 Chain B: L.127, E.165, N.168, V.169, R.172 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:E.165, A:N.168, B:E.165, B:N.168, B:R.172 GOL.5: 11 residues within 4Å: Chain C: L.127, E.165, N.168, V.169, R.172 Chain D: T.123, L.127, E.165, N.168, V.169, R.172 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:E.165, D:N.168, C:E.165, C:N.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heron, P.W. et al., Bisphosphonate Inhibitors of Mammalian Glycolytic Aldolase. J.Med.Chem. (2018)

Release Date

2017-10-25

Peptides

Fructose-bisphosphate aldolase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fructose-bisphosphate aldolase A

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