SMTL ID : 5tlw.1

Fructose-1,6-bisphosphate aldolase from rabbit muscle in complex with the inhibitor 1-phosphate-benzene 4-bisphosphonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

4 x RD3: {[4-(phosphonooxy)phenyl]methylene}bis(phosphonic acid)(Non-covalent)

RD3.1: 9 residues within 4Å: Chain A: E.34, S.35, S.38, K.41, R.42, K.107, K.146, R.148, R.303 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.35, A:S.38, A:K.107, A:K.146 Water bridges: A:R.148, A:R.148, A:R.148, A:K.229, A:K.229 Salt bridges: A:K.41, A:R.303 RD3.3: 10 residues within 4Å: Chain B: D.33, E.34, S.35, S.38, K.41, R.42, K.107, K.146, R.148, R.303 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.35, B:S.35, B:S.38, B:K.107, B:K.146 Water bridges: B:R.148 Salt bridges: B:K.41, B:R.303 RD3.4: 9 residues within 4Å: Chain C: D.33, E.34, S.35, S.38, R.42, K.107, K.146, R.148, R.303 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.35, C:S.35, C:S.38, C:K.107, C:K.146 Water bridges: C:D.109, C:R.148, C:R.148, C:R.148 Salt bridges: C:R.303 RD3.6: 9 residues within 4Å: Chain D: E.34, S.35, S.38, K.41, R.42, K.107, K.146, R.148, R.303 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:S.35, D:S.35, D:S.38, D:S.38, D:K.107, D:K.146 Water bridges: D:D.109, D:R.148 Salt bridges: D:K.41, D:R.303

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 12 residues within 4Å: Chain A: L.127, E.165, N.168, V.169, R.172 Chain B: T.123, T.124, L.127, E.165, N.168, V.169, R.172 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:E.165, A:R.172, B:E.165, B:N.168 Water bridges: A:T.123, A:R.172, B:T.124 GOL.5: 11 residues within 4Å: Chain C: L.127, E.165, N.168, V.169, R.172 Chain D: T.123, L.127, E.165, N.168, V.169, R.172 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:E.165, D:N.168, C:E.165, C:N.168, C:R.172 Water bridges: C:R.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heron, P.W. et al., Bisphosphonate Inhibitors of Mammalian Glycolytic Aldolase. J.Med.Chem. (2018)

Release Date

2017-10-25

Peptides

Fructose-bisphosphate aldolase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fructose-bisphosphate aldolase A

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