SMTL ID : 5tok.1

Crystal structure of the RSV F glycoprotein in complex with the neutralizing single-domain antibody F-VHH-L66

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.500, R.507 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.500 NAG.2: 1 residues within 4Å: Chain B: N.500 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain C: S.493, N.500 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.500

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: N.183 Chain B: N.426, K.427, G.446, D.448, K.461 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.426, B:G.446, B:D.448 Salt bridges: B:K.427, B:K.461

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rossey, I. et al., Potent single-domain antibodies that arrest respiratory syncytial virus fusion protein in its prefusion state. Nat Commun (2017)

Release Date

2017-02-22

Peptides

Fusion glycoprotein F0, Fibritin chimera: ABC
Single-domain antibody F-VHH-L66: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Fusion glycoprotein F0, Fibritin chimera

Single-domain antibody F-VHH-L66

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