SMTL ID : 5tr3.1

2.5 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Pseudomonas putida in Complex with FAD.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 38 residues within 4Å: Chain A: I.13, G.14, G.16, P.17, G.18, I.36, E.37, K.38, Y.39, G.50, T.51, C.52, V.55, G.56, C.57, S.60, K.61, G.123, H.124, G.125, A.153, S.154, G.155, S.156, S.174, I.195, R.282, L.289, G.321, D.322, M.328, L.329, A.330, H.331, A.333, Y.361 Chain B: H.454, P.455 25 PLIP interactions: 22 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.195 Hydrogen bonds: A:G.18, A:K.38, A:K.38, A:Y.39, A:T.51, A:T.51, A:C.52, A:K.61, A:G.125, A:G.125, A:S.156, A:D.322, A:M.328, A:A.330, B:H.454 Water bridges: A:G.16, A:G.19, A:E.37, A:G.50, A:G.155, A:V.323, B:H.454, B:H.454 pi-Cation interactions: A:K.38 FAD.3: 38 residues within 4Å: Chain A: H.454, P.455 Chain B: I.13, G.14, G.16, P.17, G.18, I.36, E.37, K.38, Y.39, G.50, T.51, C.52, V.55, G.56, C.57, S.60, K.61, G.123, H.124, G.125, A.153, S.154, G.155, S.156, S.174, I.195, R.282, L.289, G.321, D.322, M.328, L.329, A.330, H.331, A.333, Y.361 25 PLIP interactions: 24 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.195 Hydrogen bonds: B:G.16, B:G.18, B:G.19, B:K.38, B:K.38, B:Y.39, B:T.51, B:T.51, B:T.51, B:C.52, B:K.61, B:G.125, B:G.125, B:S.156, B:D.322, B:M.328, B:A.330, A:H.454 Water bridges: B:A.15, B:G.16, B:G.16, B:G.50, B:G.155 pi-Cation interactions: B:K.38

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 3 residues within 4Å: Chain A: E.439, F.440 Chain B: M.450 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.439, A:E.439

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain B: G.326, Y.353 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 2.5 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Pseudomonas putida in Complex with FAD. To Be Published

Release Date

2016-11-09

Peptides

Dihydrolipoyl dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydrolipoyl dehydrogenase

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