SMTL ID : 6awa.1

1.83 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Pseudomonas putida in Complex with FAD and Adenosine-5'-monophosphate.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 14 residues within 4Å: Chain A: I.161, I.190, G.191, G.193, L.213, E.214, A.215, L.216, A.246, R.247, V.248, A.279, V.280, G.281 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.215, A:V.248, A:V.248 Water bridges: A:G.193, A:V.194, A:V.194, A:V.194, A:I.195, A:G.281 AMP.5: 14 residues within 4Å: Chain B: I.161, I.190, G.191, G.193, L.213, E.214, A.215, L.216, A.246, R.247, V.248, A.279, V.280, G.281 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.215, B:L.216, B:V.248, B:V.248 Water bridges: B:G.193, B:V.194, B:G.281

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 38 residues within 4Å: Chain A: I.13, G.14, A.15, G.16, P.17, G.18, G.19, I.36, E.37, K.38, G.50, T.51, C.52, V.55, G.56, C.57, S.60, K.61, G.123, H.124, G.125, A.153, S.154, G.155, S.156, S.174, I.195, R.282, G.321, D.322, M.328, L.329, A.330, H.331, A.333, Y.361 Chain B: H.454, P.455 27 PLIP interactions: 24 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.195, A:I.195 Hydrogen bonds: A:A.15, A:G.16, A:G.18, A:G.19, A:K.38, A:K.38, A:T.51, A:T.51, A:T.51, A:C.52, A:K.61, A:G.125, A:G.125, A:S.156, A:D.322, A:M.328, A:A.330, B:H.454 Water bridges: A:G.155, A:S.156, A:V.323, A:A.333, B:H.454, B:H.454 pi-Cation interactions: A:K.38 FAD.6: 39 residues within 4Å: Chain A: H.454, P.455 Chain B: I.13, G.14, A.15, G.16, P.17, G.18, I.36, E.37, K.38, Y.39, G.50, T.51, C.52, V.55, G.56, C.57, S.60, K.61, G.123, H.124, G.125, A.153, S.154, G.155, S.156, S.174, I.195, R.282, L.289, G.321, D.322, M.328, L.329, A.330, H.331, A.333, Y.361 27 PLIP interactions: 24 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:T.51, B:I.195 Hydrogen bonds: B:A.15, B:G.16, B:G.18, B:G.19, B:K.38, B:T.51, B:T.51, B:C.52, B:K.61, B:G.125, B:G.125, B:S.156, B:D.322, B:M.328, B:A.330, B:H.331, A:H.454 Water bridges: B:K.38, B:G.50, B:G.155, B:V.323, B:A.333, A:H.454, A:H.454 pi-Cation interactions: B:K.38

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: F.180, Q.181, A.182, K.275 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.181, A:A.182 Water bridges: A:K.275, A:K.275 Salt bridges: A:K.275 SO4.4: 3 residues within 4Å: Chain A: K.126, A.291, S.292 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.290, A:S.292 Salt bridges: A:K.126 SO4.7: 4 residues within 4Å: Chain B: K.126, L.290, A.291, S.292 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.292 Salt bridges: B:K.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.83 Angstrom Resolution Crystal Structure of Dihydrolipoyl Dehydrogenase from Pseudomonas putida in Complex with FAD and Adenosine-5'-monophosphate. To Be Published

Release Date

2017-10-04

Peptides

Dihydrolipoyl dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydrolipoyl dehydrogenase

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