SMTL ID : 5tr4.1 (1 other biounit)

Structure of Ubiquitin activating enzyme (Uba1) in complex with ubiquitin and TAK-243

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 61T: [(1~{R},2~{R},3~{S},4~{R})-2,3-bis(oxidanyl)-4-[[2-[3-(trifluoromethylsulfanyl)phenyl]pyrazolo[1,5-a]pyrimidin-7-yl]amino]cyclopentyl]methyl sulfamate(Covalent)

61T.1: 24 residues within 4Å: Chain A: V.433, G.434, G.436, A.437, T.462, D.463, M.464, D.465, R.474, Q.475, K.487, R.512, V.513, G.514, P.515, A.535, L.536, D.537, N.538, D.540, A.541, Y.544 Chain B: G.75, G.76 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.512, A:L.536, A:A.541 Hydrogen bonds: A:A.437, A:D.465, A:Q.475, A:K.487, A:V.513, B:G.76 Water bridges: A:I.438, A:R.474, A:R.474, A:K.487, A:D.537, A:D.537, A:D.537 Salt bridges: A:R.474, A:K.487 pi-Cation interactions: A:R.512

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hyer, M. et al., Identification and Characterization of a Small Molecule Inhibitor of the Ubiquitin Activating Enzyme (TAK-243). To be published

Release Date

2017-11-01

Peptides

Ubiquitin-activating enzyme E1 1: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-activating enzyme E1 1

Ubiquitin

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