SMTL ID : 6zqh.2 (1 other biounit)

Yeast Uba1 in complex with ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 14 residues within 4Å: Chain A: T.183, E.215, I.254, N.607, K.608, I.609, D.610, R.713, F.846, I.847, E.848, T.849, A.850, K.854 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.215, A:I.609, A:E.848, A:K.854

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 7 residues within 4Å: Chain A: Y.465, I.466, V.467, G.511, K.512, I.513, N.514 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.513 BME.4: 3 residues within 4Å: Chain B: E.51, R.54, Y.59 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.51, B:R.54, B:R.54

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 12 residues within 4Å: Chain A: F.280, S.281, D.282, K.285, F.286, R.288, A.289, L.292, M.389, Y.390, F.391, D.392 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.281, A:S.281, A:K.285, A:R.288, A:Y.390, A:Y.390, A:D.392, A:D.392, A:D.392

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, R.Q. et al., Development of ADPribosyl Ubiquitin Analogues to Study Enzymes Involved in Legionella Infection. Chemistry (2021)

Release Date

2020-11-04

Peptides

Ubiquitin-activating enzyme E1 1: A
Ubiquitin-40S ribosomal protein S31: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ubiquitin-activating enzyme E1 1

Ubiquitin-40S ribosomal protein S31

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