SMTL ID : 5tuf.1 (1 other biounit)

Crystal structure of tetracycline destructase Tet(50) in complex with anhydrotetracycline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.301, K.302, G.303 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.301, A:G.303 Water bridges: A:K.302, A:K.302, A:K.302 SO4.2: 6 residues within 4Å: Chain A: A.77, K.78, G.81, I.82, Y.83, D.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.81, A:Y.83, A:D.84 SO4.3: 8 residues within 4Å: Chain A: F.116, P.317, L.318, S.319, G.320, F.365, V.369, I.392 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.318 Water bridges: A:D.68, A:G.115 SO4.4: 4 residues within 4Å: Chain A: S.222, N.223, H.224, K.225 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.222, A:N.223, A:N.223, A:H.224, A:K.225 Salt bridges: A:K.225

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 34 residues within 4Å: Chain A: I.31, G.32, V.33, G.34, V.35, A.36, I.54, E.55, K.56, S.57, Q.65, A.66, L.67, D.68, R.70, R.126, Q.146, A.176, D.177, G.178, A.182, V.202, Y.288, G.309, D.310, A.311, C.314, P.317, G.320, Q.321, G.322, N.323, N.324, A.326 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Q.65, A:Y.288, A:P.317, A:P.317 Hydrogen bonds: A:V.33, A:V.35, A:A.36, A:K.56, A:S.57, A:Q.65, A:D.68, A:D.68, A:D.68, A:R.126, A:G.178, A:D.310, A:G.322, A:G.322, A:N.323 Water bridges: A:G.34, A:G.34, A:I.179, A:A.311, A:G.320, A:Q.321, A:N.324, A:A.326 Salt bridges: A:R.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J. et al., Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes. Nat. Chem. Biol. (2017)

Release Date

2017-05-10

Peptides

Tetracycline destructase Tet(50): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tetracycline destructase Tet(50)

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