SMTL ID : 5tzn.1 (1 other biounit)

Structure of the viral immunoevasin m12 (Smith) bound to the natural killer cell receptor NKR-P1B (B6)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: L.45, I.46, Q.47, W.81, N.83, T.85, N.88, L.92 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.81, A:L.92 Hydrogen bonds: A:Q.47, A:Q.47 NAG-NAG.3: 4 residues within 4Å: Chain B: N.71, D.99, K.151, N.152 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.152

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 4 residues within 4Å: Chain B: T.55, D.119, F.132, N.134 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.119, B:N.134

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.4: 4 residues within 4Å: Chain A: S.102, C.116 Chain B: S.21, R.24 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aguilar, O.A. et al., A Viral Immunoevasin Controls Innate Immunity by Targeting the Prototypical Natural Killer Cell Receptor Family. Cell (2017)

Release Date

2017-05-24

Peptides

Killer cell lectin-like receptor subfamily B member 1B allele B: A
Glycoprotein family protein m12: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

Killer cell lectin-like receptor subfamily B member 1B allele B

Glycoprotein family protein m12

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