SMTL ID : 5tzn.2 (1 other biounit)

Structure of the viral immunoevasin m12 (Smith) bound to the natural killer cell receptor NKR-P1B (B6)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: T.55, D.119, F.132, N.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.55 Hydrophobic interactions: A:F.132

1 x NAG- NAG- BMA- BMA: beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA.2: 4 residues within 4Å: Chain A: N.71, D.99, K.151, N.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.152, A:N.152

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 7 residues within 4Å: Chain B: L.45, I.46, Q.47, W.81, N.83, T.85, L.92 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.81, B:L.92 Hydrogen bonds: B:Q.47, B:Q.47

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.4: 3 residues within 4Å: Chain A: S.21 Chain B: S.102, C.116 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aguilar, O.A. et al., A Viral Immunoevasin Controls Innate Immunity by Targeting the Prototypical Natural Killer Cell Receptor Family. Cell (2017)

Release Date

2017-05-24

Peptides

Glycoprotein family protein m12: A
Killer cell lectin-like receptor subfamily B member 1B allele B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
W

Glycoprotein family protein m12

Killer cell lectin-like receptor subfamily B member 1B allele B

Related Entries With Identical Sequence