SMTL ID : 5tzt.1 (1 other biounit)

Crystal structure of human CD47 ECD bound to Fab of C47B161

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: D.156, N.157 No protein-ligand interaction detected (PLIP) GOL.2: 2 residues within 4Å: Chain B: S.7, G.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.8

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain C: N.5, F.24 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain C: E.11, N.16 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pietsch, E.C. et al., Anti-leukemic activity and tolerability of anti-human CD47 monoclonal antibodies. Blood Cancer J (2017)

Release Date

2017-03-15

Peptides

Light Chain of Fab C47B161: A
Heavy Chain of Fab C47B161: B
Leukocyte surface antigen CD47: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
D

Light Chain of Fab C47B161

Heavy Chain of Fab C47B161

Leukocyte surface antigen CD47

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