SMTL ID : 5tzt.2 (1 other biounit)

Crystal structure of human CD47 ECD bound to Fab of C47B161

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: Q.27 No protein-ligand interaction detected (PLIP) GOL.2: 2 residues within 4Å: Chain B: G.110, T.155 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.110 GOL.3: 2 residues within 4Å: Chain B: S.7, G.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.8

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain C: K.43, G.92, N.93 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pietsch, E.C. et al., Anti-leukemic activity and tolerability of anti-human CD47 monoclonal antibodies. Blood Cancer J (2017)

Release Date

2017-03-15

Peptides

Light Chain of Fab C47B161: A
Heavy Chain of Fab C47B161: B
Leukocyte surface antigen CD47: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
C

Light Chain of Fab C47B161

Heavy Chain of Fab C47B161

Leukocyte surface antigen CD47

Related Entries With Identical Sequence