SMTL ID : 5u7e.2 (1 other biounit)

Apo dihydroneopterin triphosphate pyrophosphohydrolase from E. coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: F.81, E.82, R.97, W.136 Chain B: F.81, E.82, R.97, W.136 Ligands: SO4.3 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:E.82, A:E.82 Salt bridges: B:R.97, A:R.97 Water bridges: A:E.82, A:W.136 SO4.3: 9 residues within 4Å: Chain A: F.81, E.82, R.97, W.136 Chain B: F.81, E.82, R.97, W.136 Ligands: SO4.1 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.82, A:E.82 Water bridges: B:E.82, B:W.136 Salt bridges: B:R.97, A:R.97

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: K.7, R.29, R.90 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.7, A:K.7, A:R.29, A:R.90, A:R.90 GOL.4: 3 residues within 4Å: Chain B: K.7, R.29, R.90 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.7, B:K.7, B:R.29, B:R.90, B:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hill, S.E. et al., Metal ion coordination in the E. coli Nudix hydrolase dihydroneopterin triphosphate pyrophosphatase: New clues into catalytic mechanism. PLoS ONE (2017)

Release Date

2017-06-21

Peptides

Dihydroneopterin triphosphate diphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dihydroneopterin triphosphate diphosphatase

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