- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 10 x NI: NICKEL (II) ION(Non-covalent)
NI.4: 8 residues within 4Å:- Chain A: T.40, E.56, E.60, E.117
- Ligands: SO4.2, NI.5, NI.6, NI.7
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.56, A:E.60, A:E.117, H2O.2, H2O.3
NI.5: 7 residues within 4Å:- Chain A: T.40, G.41, E.56, E.60, E.117
- Ligands: SO4.2, NI.4
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.40, A:E.60, A:E.117, H2O.2, H2O.2
NI.6: 5 residues within 4Å:- Chain A: R.55, E.56
- Ligands: SO4.2, NI.4, NI.7
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:E.56, H2O.2, H2O.3, H2O.3, H2O.4
NI.7: 4 residues within 4Å:- Chain A: E.117
- Ligands: SO4.2, NI.4, NI.6
No protein-ligand interaction detected (PLIP)NI.8: 1 residues within 4Å:- Chain A: H.109
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.109
NI.12: 8 residues within 4Å:- Chain B: T.40, E.56, E.60, E.117
- Ligands: SO4.10, NI.13, NI.14, NI.15
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.56, B:E.60, B:E.117, H2O.7, H2O.8
NI.13: 7 residues within 4Å:- Chain B: T.40, G.41, E.56, E.60, E.117
- Ligands: SO4.10, NI.12
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:T.40, B:E.60, B:E.117, H2O.7, H2O.7
NI.14: 5 residues within 4Å:- Chain B: R.55, E.56
- Ligands: SO4.10, NI.12, NI.15
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:E.56, H2O.7, H2O.7, H2O.8, H2O.9
NI.15: 4 residues within 4Å:- Chain B: E.117
- Ligands: SO4.10, NI.12, NI.14
No protein-ligand interaction detected (PLIP)NI.16: 1 residues within 4Å:- Chain B: H.109
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.109
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hill, S.E. et al., Metal ion coordination in the E. coli Nudix hydrolase dihydroneopterin triphosphate pyrophosphatase: New clues into catalytic mechanism. PLoS ONE (2017)
- Release Date
- 2017-06-21
- Peptides
- Dihydroneopterin triphosphate diphosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 10 x NI: NICKEL (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hill, S.E. et al., Metal ion coordination in the E. coli Nudix hydrolase dihydroneopterin triphosphate pyrophosphatase: New clues into catalytic mechanism. PLoS ONE (2017)
- Release Date
- 2017-06-21
- Peptides
- Dihydroneopterin triphosphate diphosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A