SMTL ID : 5uat.4 (3 other biounits)

Structure of human PYCR-1 complexed with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 26 residues within 4Å: Chain A: I.28, G.29, A.30, G.31, Q.32, L.33, S.55, S.56, P.57, D.58, M.59, N.78, A.91, V.92, K.93, P.94, I.96, I.100, C.117, A.118, A.119, M.143, T.144, T.146 Chain B: N.252, V.253 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.33 Hydrogen bonds: A:A.30, A:A.30, A:Q.32, A:L.33, A:S.56, A:S.56, A:D.58, A:N.78, A:V.92, A:A.119, B:N.252 Water bridges: A:G.31, A:A.34 NDP.2: 26 residues within 4Å: Chain A: N.252, V.253 Chain B: I.28, G.29, A.30, G.31, Q.32, L.33, S.55, S.56, P.57, D.58, M.59, N.78, A.91, V.92, K.93, P.94, I.96, I.100, C.117, A.118, A.119, M.143, T.144, T.146 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.33 Hydrogen bonds: B:A.30, B:A.30, B:Q.32, B:L.33, B:S.56, B:S.56, B:D.58, B:N.78, B:V.92, B:A.119, A:N.252 Water bridges: B:G.31, B:A.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christensen, E.M. et al., Resolving the cofactor-binding site in the proline biosynthetic enzyme human pyrroline-5-carboxylate reductase 1. J. Biol. Chem. (2017)

Release Date

2017-03-15

Peptides

Pyrroline-5-carboxylate reductase 1, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
E

Pyrroline-5-carboxylate reductase 1, mitochondrial

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