SMTL ID : 5uaw.1 (3 other biounits)

Structure of apo human PYCR-1 crystallized in space group P21212

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-10-mer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: V.253, S.255, G.258, A.259, T.260 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.255, A:S.255, A:T.260 Water bridges: A:G.258, A:A.259, A:A.259, A:T.260, A:T.260 SO4.2: 6 residues within 4Å: Chain A: A.119 Chain B: V.253, S.255, G.258, A.259, T.260 9 PLIP interactions: 1 interactions with chain A, 8 interactions with chain B Water bridges: A:G.197, B:V.253, B:A.259, B:T.260, B:I.261 Hydrogen bonds: B:S.255, B:S.255, B:S.255, B:T.260 SO4.3: 5 residues within 4Å: Chain C: V.253, S.255, G.258, A.259, T.260 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:V.253, C:S.255, C:S.255, C:A.259, C:T.260, C:T.260 Water bridges: C:T.260, C:I.261 SO4.4: 5 residues within 4Å: Chain D: V.253, S.255, G.258, A.259, T.260 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:S.255, D:S.255, D:S.255, D:T.260, D:T.260 Water bridges: D:A.259, D:A.259, D:T.260, D:T.260, D:I.261 SO4.5: 5 residues within 4Å: Chain E: V.253, S.255, G.258, A.259, T.260 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:S.255, E:S.255, E:S.255, E:T.260, E:T.260, E:T.260 Water bridges: E:G.258, E:A.259, E:A.259 SO4.6: 5 residues within 4Å: Chain F: V.253, S.255, G.258, A.259, T.260 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:S.255, F:S.255, F:T.260 Water bridges: F:G.258, F:A.259, F:A.259, F:T.260, F:T.260 SO4.7: 6 residues within 4Å: Chain F: A.119 Chain G: V.253, S.255, G.258, A.259, T.260 9 PLIP interactions: 8 interactions with chain G, 1 interactions with chain F Hydrogen bonds: G:S.255, G:S.255, G:S.255, G:T.260 Water bridges: G:V.253, G:A.259, G:T.260, G:I.261, F:G.197 SO4.8: 5 residues within 4Å: Chain H: V.253, S.255, G.258, A.259, T.260 8 PLIP interactions: 8 interactions with chain H Hydrogen bonds: H:V.253, H:S.255, H:S.255, H:A.259, H:T.260, H:T.260 Water bridges: H:T.260, H:I.261 SO4.9: 5 residues within 4Å: Chain I: V.253, S.255, G.258, A.259, T.260 10 PLIP interactions: 10 interactions with chain I Hydrogen bonds: I:S.255, I:S.255, I:S.255, I:T.260, I:T.260 Water bridges: I:A.259, I:A.259, I:T.260, I:T.260, I:I.261 SO4.10: 5 residues within 4Å: Chain J: V.253, S.255, G.258, A.259, T.260 9 PLIP interactions: 9 interactions with chain J Hydrogen bonds: J:S.255, J:S.255, J:S.255, J:T.260, J:T.260, J:T.260 Water bridges: J:G.258, J:A.259, J:A.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christensen, E.M. et al., Resolving the cofactor-binding site in the proline biosynthetic enzyme human pyrroline-5-carboxylate reductase 1. J. Biol. Chem. (2017)

Release Date

2017-03-15

Peptides

Pyrroline-5-carboxylate reductase 1, mitochondrial: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Pyrroline-5-carboxylate reductase 1, mitochondrial

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