SMTL ID : 5ue3.2 (2 other biounits)

proMMP-9desFnII

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.65, V.67, H.192, H.196, H.202 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.65, A:H.192, A:H.196, A:H.202 ZN.2: 4 residues within 4Å: Chain A: H.141, D.143, H.156, H.169 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.141, A:D.143, A:H.156, A:H.169

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.148, G.149, K.150, D.151, L.153, D.171, E.174 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.148, A:G.149, A:D.151, A:L.153, A:D.171, A:E.174 CA.4: 4 residues within 4Å: Chain A: D.131, G.163, Q.165, D.167 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.131, A:G.163, A:Q.165, A:D.167, H2O.2, H2O.3

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: K.81, W.82, H.83, H.84 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.83 Water bridges: A:K.81, A:H.83, A:G.161 Salt bridges: A:H.84 SO4.6: 5 residues within 4Å: Chain A: S.177, K.180, G.181, Q.182, G.183 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.177, A:G.179, A:G.181, A:Q.182, A:G.183, A:G.183 Water bridges: A:L.178, A:L.178, A:L.178, A:K.180 SO4.7: 5 residues within 4Å: Chain A: D.69, L.70, G.71, R.72, D.201 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.71, A:G.71 Water bridges: A:D.201, A:H.202 Salt bridges: A:R.72 SO4.8: 4 residues within 4Å: Chain A: E.207, R.215, T.217, H.223 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.217 Water bridges: A:T.217, A:H.223 Salt bridges: A:R.215, A:H.223

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.9: 9 residues within 4Å: Chain A: L.188, V.189, H.192, A.208, L.209, Y.211, M.213, Y.214, R.215 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.211, A:M.213, A:R.215 Water bridges: A:E.207, A:Y.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scannevin, R.H. et al., Discovery of a highly selective chemical inhibitor of matrix metalloproteinase-9 (MMP-9) that allosterically inhibits zymogen activation. J. Biol. Chem. (2017)

Release Date

2017-09-13

Peptides

Matrix metalloproteinase-9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Matrix metalloproteinase-9

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