SMTL ID : 5ue4.3 (2 other biounits)

proMMP-9desFnII complexed to JNJ0966 INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.65, H.192, H.196, H.202 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.65, A:H.192, A:H.196, A:H.202 ZN.2: 4 residues within 4Å: Chain A: H.141, D.143, H.156, H.169 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.141, A:D.143, A:H.156, A:H.169 ZN.7: 5 residues within 4Å: Chain B: C.65, V.67, H.192, H.196, H.202 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.65, B:H.192, B:H.196, B:H.202 ZN.8: 4 residues within 4Å: Chain B: H.141, D.143, H.156, H.169 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.141, B:D.143, B:H.156, B:H.169

5 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.148, G.149, D.151, L.153, D.171, E.174 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.148, A:G.149, A:D.151, A:L.153, A:D.171, A:E.174 CA.4: 4 residues within 4Å: Chain A: D.131, G.163, Q.165, D.167 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.131, A:G.163, A:Q.165, A:D.167, H2O.1, H2O.3 CA.5: 4 residues within 4Å: Chain A: S.95, D.97, D.172, E.174 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:D.172, A:D.172, A:E.174, H2O.2 CA.9: 6 residues within 4Å: Chain B: D.148, G.149, D.151, L.153, D.171, E.174 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:D.148, B:G.149, B:D.151, B:L.153, B:D.171, B:E.174 CA.10: 5 residues within 4Å: Chain B: D.131, G.163, I.164, Q.165, D.167 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.131, B:G.163, B:Q.165, B:D.167, H2O.8, H2O.9

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: W.82, H.83, H.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.83 Salt bridges: A:H.84 SO4.11: 4 residues within 4Å: Chain B: K.81, W.82, H.83, H.84 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.81, B:H.83 Water bridges: B:H.83 Salt bridges: B:H.84 SO4.12: 8 residues within 4Å: Chain A: G.71, R.72 Chain B: S.177, G.179, K.180, G.181, Q.182, G.183 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.177, B:G.179, B:G.181, B:Q.182, B:G.183, B:G.183 Water bridges: A:R.72 Salt bridges: A:R.72

1 x 5XQ: ~{N}-[5-[2-[(2-methoxyphenyl)amino]-1,3-thiazol-4-yl]-4-methyl-1,3-thiazol-2-yl]ethanamide(Non-covalent)

5XQ.13: 14 residues within 4Å: Chain B: V.67, P.68, R.72, F.76, L.80, Y.145, H.156, A.157, F.158, P.159, H.196, G.199, L.200, D.201 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.68, B:R.72, B:F.76, B:Y.145 Hydrogen bonds: B:A.157 Water bridges: B:D.201 pi-Cation interactions: B:R.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scannevin, R.H. et al., Discovery of a highly selective chemical inhibitor of matrix metalloproteinase-9 (MMP-9) that allosterically inhibits zymogen activation. J. Biol. Chem. (2017)

Release Date

2017-09-13

Peptides

Matrix metalloproteinase-9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Matrix metalloproteinase-9

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