SMTL ID : 5uqy.1 (1 other biounit)

Crystal structure of Marburg virus GP in complex with the human survivor antibody MR78

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.78, S.80, H.108, G.141, V.143 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain A: Q.26, N.155, T.157 Chain B: N.40, T.41, T.43 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:T.43 NAG-NAG.4: 5 residues within 4Å: Chain E: N.78, S.80, H.108, G.141, V.143 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 6 residues within 4Å: Chain E: Q.26, N.155, T.157 Chain F: N.40, T.41, T.43 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:T.43 NAG-NAG.7: 5 residues within 4Å: Chain I: N.78, S.80, H.108, G.141, V.143 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 6 residues within 4Å: Chain I: Q.26, N.155, T.157 Chain J: N.40, T.41, T.43 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:T.43

3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.3: 7 residues within 4Å: Chain A: Q.41, W.124, A.126, N.148 Chain B: N.129 Chain J: W.97, F.101 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN.6: 7 residues within 4Å: Chain B: W.97, F.101 Chain E: Q.41, W.124, A.126, N.148 Chain F: N.129 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN.9: 7 residues within 4Å: Chain F: W.97, F.101 Chain I: Q.41, W.124, A.126, N.148 Chain J: N.129 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashiguchi, T. et al., Structural basis for Marburg virus neutralization by a cross-reactive human antibody. Cell (2015)

Release Date

2017-03-01

Peptides

ENVELOPE GLYCOPROTEIN GP1: AEI
ENVELOPE GLYCOPROTEIN GP2: BFJ
MR78 Fab light chain: CGK
MR78 Fab heavy chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
C

G
C

K
C

D
D

H
D

L
D

ENVELOPE GLYCOPROTEIN GP1

ENVELOPE GLYCOPROTEIN GP2

MR78 Fab light chain

MR78 Fab heavy chain

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