SMTL ID : 5uqy.2 (1 other biounit)

Crystal structure of Marburg virus GP in complex with the human survivor antibody MR78

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.78, S.80, H.108, G.141, V.143 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain E: Q.26, N.155, T.157 Chain F: N.40, T.41 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain I: N.78, S.80, H.108, G.141, V.143 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 6 residues within 4Å: Chain I: Q.26, N.155, T.157, V.158 Chain J: N.40, T.41 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:T.41

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.2: 6 residues within 4Å: Chain A: Q.41, W.124, N.148 Chain B: N.129 Chain F: W.97, F.101 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.3: 5 residues within 4Å: Chain E: N.78, H.108, G.141, V.143 Ligands: MAN.10 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.5: 6 residues within 4Å: Chain E: Q.41, W.124, A.126, N.148 Chain F: N.129 Chain J: W.97 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.8: 7 residues within 4Å: Chain B: W.97, F.101 Chain I: Q.41, W.124, N.148 Chain J: N.129 Ligands: MAN.11 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 4 residues within 4Å: Chain A: Q.26, N.155, T.157 Chain B: T.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.155, A:T.157, A:T.157

2 x MAN: alpha-D-mannopyranose(Non-functional Binders)

MAN.10: 2 residues within 4Å: Ligands: NAG-NAG-BMA-MAN.3, NAG-NAG-BMA-MAN.3 No protein-ligand interaction detected (PLIP) MAN.11: 1 residues within 4Å: Ligands: NAG-NAG-BMA-MAN-MAN.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashiguchi, T. et al., Structural basis for Marburg virus neutralization by a cross-reactive human antibody. Cell (2015)

Release Date

2017-03-01

Peptides

ENVELOPE GLYCOPROTEIN GP1: AEI
ENVELOPE GLYCOPROTEIN GP2: BFJ
MR78 Fab light chain: CGK
MR78 Fab heavy chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

E
I

I
M

B
F

F
J

J
N

C
G

G
K

K
O

D
H

H
L

L
P

ENVELOPE GLYCOPROTEIN GP1

ENVELOPE GLYCOPROTEIN GP2

MR78 Fab light chain

MR78 Fab heavy chain

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