SMTL ID : 5ur6.1

PYR1 bound to the rationally designed agonist cyanabactin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-dimer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.36, Q.169 Chain B: R.180, N.181 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.181, B:N.181, A:Q.36, A:Q.36, A:Q.169 Water bridges: B:A.179, B:R.180 Salt bridges: B:R.180 SO4.2: 2 residues within 4Å: Chain A: R.50, M.73 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.50 SO4.3: 2 residues within 4Å: Chain A: S.47, R.50 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.50 SO4.4: 2 residues within 4Å: Chain A: R.104, R.128 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.104, A:R.128 SO4.5: 6 residues within 4Å: Chain A: H.39, R.134, I.135, W.136 Chain B: R.37, H.39 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Water bridges: A:H.39, A:I.135 Salt bridges: A:H.39, A:R.134, B:R.37, B:H.39 SO4.6: 2 residues within 4Å: Chain A: E.102, R.103 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.102, A:R.103, A:R.103 Salt bridges: A:R.103 SO4.8: 4 residues within 4Å: Chain A: R.180, N.181 Chain B: Q.36, Q.169 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.181, A:N.181, B:Q.36, B:Q.36, B:Q.169 Water bridges: A:A.179, A:R.180 Salt bridges: A:R.180 SO4.9: 2 residues within 4Å: Chain B: R.50, M.73 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.50 SO4.10: 2 residues within 4Å: Chain B: S.47, R.50 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.50 SO4.11: 2 residues within 4Å: Chain B: R.104, R.128 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.104, B:R.128 SO4.12: 6 residues within 4Å: Chain A: R.37, H.39 Chain B: H.39, R.134, I.135, W.136 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Water bridges: B:H.39, B:I.135 Salt bridges: B:H.39, B:R.134, A:R.37, A:H.39 SO4.13: 2 residues within 4Å: Chain B: E.102, R.103 4 PLIP interactions: 4 interactions with chain B Water bridges: B:E.102, B:R.103, B:R.103 Salt bridges: B:R.103

2 x 8KM: N-(4-cyano-3-cyclopropylphenyl)-1-(4-methylphenyl)methanesulfonamide(Non-covalent)

8KM.7: 16 residues within 4Å: Chain A: F.61, I.62, R.79, V.81, V.83, L.87, A.89, S.92, E.94, F.108, I.110, L.117, Y.120, F.159, V.163, N.167 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.61, A:F.61, A:V.83, A:L.87, A:A.89, A:F.108, A:I.110, A:Y.120, A:Y.120 Hydrogen bonds: A:R.79, A:E.94 Water bridges: A:R.116 8KM.14: 16 residues within 4Å: Chain B: F.61, I.62, R.79, V.81, V.83, L.87, A.89, S.92, E.94, F.108, I.110, L.117, Y.120, F.159, V.163, N.167 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.61, B:F.61, B:V.83, B:L.87, B:A.89, B:F.108, B:I.110, B:Y.120, B:Y.120 Hydrogen bonds: B:R.79, B:E.94 Water bridges: B:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vaidya, A.S. et al., A Rationally Designed Agonist Defines Subfamily IIIA Abscisic Acid Receptors As Critical Targets for Manipulating Transpiration. ACS Chem. Biol. (2017)

Release Date

2017-11-22

Peptides

Abscisic acid receptor PYR1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Abscisic acid receptor PYR1

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