SMTL ID : 5ut6.1

JAK2 JH2 in complex with a diaminopyrimidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x 8MY: 4-({4-amino-6-[3-(hydroxymethyl)-1H-pyrazol-1-yl]pyrimidin-2-yl}amino)benzonitrile(Non-covalent)

8MY.1: 13 residues within 4Å: Chain A: L.16, L.44, Q.91, E.92, F.93, V.94, K.95, G.97, S.98, K.142, N.143, L.145 Ligands: GOL.6 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.16, A:L.16, A:L.44, A:F.93, A:L.145 Hydrogen bonds: A:Q.91, A:V.94, A:V.94, A:G.97, A:N.143 Water bridges: A:K.46, A:K.46

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.138, C.140, R.180, W.183 Ligands: GOL.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.138, A:N.138, A:R.180 Water bridges: A:R.180, A:R.180 GOL.3: 3 residues within 4Å: Chain A: I.147, R.148, F.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.148 Water bridges: A:R.148 GOL.4: 6 residues within 4Å: Chain A: L.248, N.251, P.261, A.265, I.266, D.269 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.251, A:D.269, A:D.269 GOL.5: 5 residues within 4Å: Chain A: P.186, I.189, Y.231, E.232, R.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.186, A:E.190, A:Y.231, A:R.234 GOL.6: 8 residues within 4Å: Chain A: G.19, T.20, N.138, K.142, N.143, R.180 Ligands: 8MY.1, GOL.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.20, A:N.138, A:N.138, A:N.143 Water bridges: A:T.20, A:P.165, A:R.180

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.7: 4 residues within 4Å: Chain A: A.239, A.246, N.247, N.250 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.239

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 2 residues within 4Å: Chain A: H.71, K.72 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.71 Salt bridges: A:H.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newton, A.S. et al., JAK2 JH2 Fluorescence Polarization Assay and Crystal Structures for Complexes with Three Small Molecules. ACS Med Chem Lett (2017)

Release Date

2017-06-07

Peptides

Tyrosine-protein kinase JAK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase JAK2

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