SMTL ID : 5v48.1

Soluble rabbit neprilysin in complex with thiorphan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.231, K.300 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: M.249, N.257, P.295 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain B: N.91, A.94 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain B: N.271, N.274, E.275 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.132

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.530, H.534, E.593, H.658 Ligands: TIO.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.530, A:H.534, A:E.593, A:E.593 ZN.9: 5 residues within 4Å: Chain B: H.530, H.534, E.593, H.658 Ligands: TIO.10 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.530, B:H.534, B:E.593, B:E.593

2 x TIO: (2-MERCAPTOMETHYL-3-PHENYL-PROPIONYL)-GLYCINE(Non-covalent)

TIO.6: 14 residues within 4Å: Chain A: R.49, F.53, N.489, A.490, F.510, M.526, V.527, H.530, H.534, E.593, W.640, H.658, R.664 Ligands: ZN.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.53, A:F.510, A:V.527, A:W.640 Hydrogen bonds: A:N.489, A:N.489, A:R.664, A:R.664 Salt bridges: A:R.49, A:R.57, A:H.658 pi-Stacking: A:H.530 TIO.10: 16 residues within 4Å: Chain B: R.49, F.53, R.57, N.489, A.490, F.510, M.526, V.527, H.530, E.531, H.534, E.593, W.640, H.658, R.664 Ligands: ZN.9 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.53, B:F.510, B:V.527, B:H.530, B:W.640 Hydrogen bonds: B:N.489, B:N.489, B:R.664, B:R.664 Water bridges: B:R.49 Salt bridges: B:R.49, B:R.57, B:H.658 pi-Stacking: B:H.530

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 2 residues within 4Å: Chain A: N.91, A.94 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.91 Water bridges: A:R.98 NAG.8: 3 residues within 4Å: Chain A: N.271, N.274, E.275 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.274, A:E.275 Hydrogen bonds: A:N.271 NAG.11: 2 residues within 4Å: Chain B: N.231, K.300 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Labiuk, S.L. et al., Structures of soluble rabbit neprilysin complexed with phosphoramidon or thiorphan. Acta Crystallogr.,Sect.F (2019)

Release Date

2018-03-14

Peptides

Neprilysin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neprilysin

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