SMTL ID : 5v4b.1 (1 other biounit)

Crystal structure of the Skp1-FBXW7-DISC1 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain B: P.23, K.24 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.24 Water bridges: B:E.25 SO4.2: 3 residues within 4Å: Chain B: R.95, N.417, T.418 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.417, B:T.418 Salt bridges: B:R.95 SO4.3: 3 residues within 4Å: Chain B: R.203, R.243, R.412 9 PLIP interactions: 9 interactions with chain B Water bridges: B:R.203, B:R.203, B:R.203, B:R.203, B:R.203, B:R.243 Salt bridges: B:R.203, B:R.243, B:R.412 SO4.4: 4 residues within 4Å: Chain B: Q.126, Q.166, H.206, R.414 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.126, B:Q.166, B:H.206 Water bridges: B:Q.246 Salt bridges: B:R.414 SO4.5: 4 residues within 4Å: Chain B: N.130, R.131, S.145, V.147 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.130, B:S.145 Water bridges: B:R.131 Salt bridges: B:R.131 SO4.6: 3 residues within 4Å: Chain B: G.160, G.161, T.177 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.161, B:T.177 Water bridges: B:D.137, B:N.139, B:N.139, B:N.139 SO4.7: 2 residues within 4Å: Chain B: R.153, T.154 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.154, B:T.154 Salt bridges: B:R.153 SO4.8: 1 residues within 4Å: Chain B: R.153 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.153 SO4.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.10: 5 residues within 4Å: Chain B: W.103, N.371, I.376, A.415, S.416 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yalla, K. et al., FBXW7 regulates DISC1 stability via the ubiquitin-proteosome system. Mol. Psychiatry (2018)

Release Date

2017-09-20

Peptides

S-phase kinase-associated protein 1,S-phase kinase-associated protein 1: A
F-box/WD repeat-containing protein 7: B
DISC1 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

S-phase kinase-associated protein 1,S-phase kinase-associated protein 1

F-box/WD repeat-containing protein 7

DISC1 peptide

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