SMTL ID : 5v4b.2 (1 other biounit)

Crystal structure of the Skp1-FBXW7-DISC1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-4-4-4-mer

Ligands

36 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain B: P.23, K.24 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain B: R.95, N.417, T.418 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain B: R.203, R.243, R.412 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain B: Q.126, Q.166, H.206, R.414 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain B: N.130, R.131, S.145, V.147 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain B: G.160, G.161, T.177 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain B: R.153, T.154 Ligand excluded by PLIP SO4.8: 1 residues within 4Å: Chain B: R.153 Ligand excluded by PLIP SO4.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain E: P.23, K.24 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain E: R.95, N.417, T.418 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain E: R.203, R.243, R.412 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain E: Q.126, Q.166, H.206, R.414 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain E: N.130, R.131, S.145, V.147 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain E: G.160, G.161, T.177 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain E: R.153, T.154 Ligand excluded by PLIP SO4.18: 1 residues within 4Å: Chain E: R.153 Ligand excluded by PLIP SO4.19: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain H: P.23, K.24 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain H: R.95, N.417, T.418 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain H: R.203, R.243, R.412 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain H: Q.126, Q.166, H.206, R.414 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain H: N.130, R.131, S.145, V.147 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain H: G.160, G.161, T.177 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain H: R.153, T.154 Ligand excluded by PLIP SO4.28: 1 residues within 4Å: Chain H: R.153 Ligand excluded by PLIP SO4.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.31: 2 residues within 4Å: Chain K: P.23, K.24 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain K: R.95, N.417, T.418 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain K: R.203, R.243, R.412 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain K: Q.126, Q.166, H.206, R.414 Ligand excluded by PLIP SO4.35: 4 residues within 4Å: Chain K: N.130, R.131, S.145, V.147 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain K: G.160, G.161, T.177 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain K: R.153, T.154 Ligand excluded by PLIP SO4.38: 1 residues within 4Å: Chain K: R.153 Ligand excluded by PLIP SO4.39: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.10: 5 residues within 4Å: Chain B: W.103, N.371, I.376, A.415, S.416 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.371 IMD.20: 5 residues within 4Å: Chain E: W.103, N.371, I.376, A.415, S.416 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.371 IMD.30: 5 residues within 4Å: Chain H: W.103, N.371, I.376, A.415, S.416 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:N.371 IMD.40: 5 residues within 4Å: Chain K: W.103, N.371, I.376, A.415, S.416 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yalla, K. et al., FBXW7 regulates DISC1 stability via the ubiquitin-proteosome system. Mol. Psychiatry (2018)

Release Date

2017-09-20

Peptides

S-phase kinase-associated protein 1,S-phase kinase-associated protein 1: ADGJ
F-box/WD repeat-containing protein 7: BEHK
DISC1 peptide: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

B
B

E
B

H
B

K
B

C
C

F
C

I
C

L
C

S-phase kinase-associated protein 1,S-phase kinase-associated protein 1

F-box/WD repeat-containing protein 7

DISC1 peptide

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