SMTL ID : 5vcr.1 (1 other biounit)

Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase with bound uranium dioxide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

2 x IUM: URANYL (VI) ION(Non-covalent)

IUM.1: 5 residues within 4Å: Chain A: R.99, E.231, D.233, H.346 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.99, A:H.346 IUM.2: 4 residues within 4Å: Chain A: E.101, R.104, E.131, L.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.104, A:R.104, A:R.104

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 6 residues within 4Å: Chain A: N.58, T.60, L.61, P.157, N.158, E.159 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.60 Hydrogen bonds: A:N.58, A:T.60, A:T.60, A:N.158 Water bridges: A:N.158, A:E.159

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: D.233, H.346 Ligands: IUM.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadirvelraj, R. et al., HumanN-acetylglucosaminyltransferase II substrate recognition uses a modular architecture that includes a convergent exosite. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-04-11

Peptides

Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

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