SMTL ID : 5vcr.2 (1 other biounit)

Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase with bound uranium dioxide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 2 residues within 4Å: Chain A: Q.114, G.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.115 Water bridges: A:I.116, A:D.117 Salt bridges: A:D.117

2 x IUM: URANYL (VI) ION(Non-covalent)

IUM.2: 6 residues within 4Å: Chain A: R.99, E.231, D.233, H.234, H.346 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.99, A:R.99 IUM.3: 1 residues within 4Å: Chain A: E.288 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.282

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Ligands: IUM.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadirvelraj, R. et al., HumanN-acetylglucosaminyltransferase II substrate recognition uses a modular architecture that includes a convergent exosite. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-04-11

Peptides

Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

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