- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.2: 14 residues within 4Å:- Chain A: W.14, Q.31, G.32, Y.120, N.179, Y.210, F.333, R.390
- Chain B: Y.58, T.59, G.61, Y.272, T.273
- Ligands: PMP.1
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:G.32, A:N.179, A:Y.210, B:T.59, B:T.273
- Salt bridges: A:R.390
- Water bridges: B:Y.58
EPE.10: 13 residues within 4Å:- Chain A: Y.58, T.59, G.61, Y.272, T.273
- Chain B: W.14, Q.31, G.32, Y.120, N.179, F.333, R.390
- Ligands: PMP.9
8 PLIP interactions:1 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:T.59, B:G.32, B:N.179, B:Y.210, B:Y.210
- Water bridges: B:Y.120, B:Y.120
- Salt bridges: B:R.390
EPE.16: 14 residues within 4Å:- Chain C: W.14, Q.31, G.32, Y.120, N.179, Y.210, F.333, R.390
- Chain D: Y.58, T.59, G.61, Y.272, T.273
- Ligands: PMP.15
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:G.32, C:N.179, C:Y.210, C:Y.210, D:T.59
- Water bridges: C:Y.120, C:Y.120
- Salt bridges: C:R.390
EPE.24: 13 residues within 4Å:- Chain C: Y.58, T.59, G.61, Y.272, T.273
- Chain D: W.14, Q.31, G.32, Y.120, N.179, F.333, R.390
- Ligands: PMP.23
8 PLIP interactions:5 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:G.32, D:N.179, D:Y.210, D:Y.210, C:T.59, C:T.273
- Salt bridges: D:R.390
- Water bridges: C:Y.58
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.3: 6 residues within 4Å:- Chain A: L.139, R.140, W.154, P.383, H.384, F.385
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.139
PGE.17: 6 residues within 4Å:- Chain C: L.139, R.140, W.154, P.383, H.384, F.385
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.139, C:H.384
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 11 residues within 4Å:- Chain A: M.116, P.118, F.119, Y.120, Y.123, I.173, L.174, N.175, H.178, N.179, Y.185
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:M.116, A:M.116, A:Y.120, A:N.175, A:N.179, A:Y.185
GOL.5: 6 residues within 4Å:- Chain A: K.142, S.152, T.155, T.186, Q.188, E.189
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.152, A:K.183, A:T.186, A:T.186
GOL.12: 5 residues within 4Å:- Chain B: Q.191, A.194, D.195, V.198, P.227
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.191
GOL.13: 5 residues within 4Å:- Chain B: I.78, E.211, W.212, H.220, K.222
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.211, B:E.211
GOL.18: 11 residues within 4Å:- Chain C: M.116, P.118, F.119, Y.120, Y.123, I.173, L.174, N.175, H.178, N.179, Y.185
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:M.116, C:M.116, C:Y.120, C:N.175, C:N.179
GOL.19: 6 residues within 4Å:- Chain C: K.142, S.152, T.155, T.186, Q.188, E.189
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.152, C:K.183, C:T.186
GOL.26: 5 residues within 4Å:- Chain D: Q.191, A.194, D.195, V.198, P.227
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.191, D:D.195
GOL.27: 5 residues within 4Å:- Chain D: I.78, E.211, W.212, H.220, K.222
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.211
- 8 x CA: CALCIUM ION(Non-covalent)
CA.6: 3 residues within 4Å:- Chain A: Q.82
- Chain C: Q.82
- Ligands: CA.20
No protein-ligand interaction detected (PLIP)CA.7: 1 residues within 4Å:- Chain A: H.200
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.1, H2O.3, H2O.3, H2O.5, H2O.8
CA.8: 2 residues within 4Å:- Chain A: N.2, E.7
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.7, A:E.7, H2O.5, H2O.7
CA.14: 1 residues within 4Å:- Chain B: H.200
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:H.200, H2O.11, H2O.13, H2O.14, H2O.15
CA.20: 3 residues within 4Å:- Chain A: Q.82
- Chain C: Q.82
- Ligands: CA.6
No protein-ligand interaction detected (PLIP)CA.21: 1 residues within 4Å:- Chain C: H.200
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.17, H2O.18, H2O.18, H2O.20, H2O.24
CA.22: 2 residues within 4Å:- Chain C: N.2, E.7
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.7, C:E.7, H2O.20, H2O.23
CA.28: 1 residues within 4Å:- Chain D: H.200
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:H.200, H2O.26, H2O.28, H2O.29, H2O.31
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.11: 7 residues within 4Å:- Chain B: L.139, R.140, S.141, W.154, P.383, H.384, F.385
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.141, B:S.141
PG4.25: 7 residues within 4Å:- Chain D: L.139, R.140, S.141, W.154, P.383, H.384, F.385
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.141, D:S.141
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wlodawer, A. et al., Detect, correct, retract: How to manage incorrect structural models. FEBS J. (2018)
- Release Date
- 2017-11-29
- Peptides
- Kynurenine--oxoglutarate transaminase 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 8 x CA: CALCIUM ION(Non-covalent)
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wlodawer, A. et al., Detect, correct, retract: How to manage incorrect structural models. FEBS J. (2018)
- Release Date
- 2017-11-29
- Peptides
- Kynurenine--oxoglutarate transaminase 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B