SMTL ID : 5vh0.1 (1 other biounit)

RHCC in complex with pyrene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-tetramer

Ligands

4 x 8P0: pyrene(Non-covalent)

8P0.1: 13 residues within 4Å: Chain A: I.19, R.22, Y.23 Chain B: I.19, R.22, Y.23 Chain C: I.19, R.22, Y.23 Chain D: I.19, R.22, Y.23 Ligands: 8P0.4 6 PLIP interactions: 1 interactions with chain D, 2 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: D:Y.23, A:I.19, A:Y.23, C:I.19, C:Y.23, B:Y.23 8P0.2: 14 residues within 4Å: Chain A: I.30, R.33, A.34, L.37 Chain B: R.33, A.34, L.37 Chain C: I.30, R.33, A.34 Chain D: I.30, R.33, A.34 Ligands: 8P0.5 9 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A, 2 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: B:R.33, B:L.37, A:R.33, A:A.34, A:L.37, D:I.30, D:R.33, C:R.33, C:A.34 8P0.4: 13 residues within 4Å: Chain A: I.19, R.22, Y.23 Chain B: I.19, R.22, Y.23 Chain C: I.19, R.22, Y.23 Chain D: I.19, R.22, Y.23 Ligands: 8P0.1 6 PLIP interactions: 1 interactions with chain D, 2 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: D:Y.23, A:I.19, A:Y.23, C:I.19, C:Y.23, B:Y.23 8P0.5: 14 residues within 4Å: Chain A: I.30, R.33, A.34 Chain B: I.30, R.33, A.34 Chain C: I.30, R.33, A.34, L.37 Chain D: R.33, A.34, L.37 Ligands: 8P0.2 9 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D, 2 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: B:I.30, B:R.33, D:R.33, D:L.37, A:R.33, A:A.34, C:R.33, C:A.34, C:L.37

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: Y.13, R.14, V.17 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain C: Y.13, R.14, V.17 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Y.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McDougall, M. et al., Proteinaceous Nano container Encapsulate Polycyclic Aromatic Hydrocarbons. Sci Rep (2019)

Release Date

2018-04-25

Peptides

Tetrabrachion: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Tetrabrachion

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