SMTL ID : 6bri.1

RHCC with unreduced and reduced Mercury complexes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.27 Å

Oligo State

homo-tetramer

Ligands

3 x HG: MERCURY (II) ION(Non-functional Binders)(Non-covalent)

HG.1: 4 residues within 4Å: Ligands: IOD.2, IOD.3, IOD.4, IOD.21 No protein-ligand interaction detected (PLIP) HG.8: 4 residues within 4Å: Chain B: M.39 Ligands: IOD.10, IOD.11, IOD.12 No protein-ligand interaction detected (PLIP) HG.20: 2 residues within 4Å: Ligands: IOD.23, IOD.24 No protein-ligand interaction detected (PLIP)

13 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 5 residues within 4Å: Chain D: T.7, I.11 Ligands: HG.1, IOD.3, IOD.21 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain B: A.8 Ligands: HG.1, IOD.2 Ligand excluded by PLIP IOD.4: 4 residues within 4Å: Chain A: I.4, T.7 Ligands: HG.1, K.15 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain B: S.25, N.28 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain B: R.36, I.40 Ligands: HG.8 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain B: M.39 Ligands: HG.8 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Ligands: HG.8 Ligand excluded by PLIP IOD.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.21: 4 residues within 4Å: Chain D: I.4, A.8 Ligands: HG.1, IOD.2 Ligand excluded by PLIP IOD.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.23: 3 residues within 4Å: Chain D: M.39 Ligands: HG.20, IOD.24 Ligand excluded by PLIP IOD.24: 2 residues within 4Å: Ligands: HG.20, IOD.23 Ligand excluded by PLIP IOD.25: 2 residues within 4Å: Chain D: D.10 Ligands: GOL.29 Ligand excluded by PLIP

2 x HGN: mercuriomercury(Non-covalent)

HGN.5: 3 residues within 4Å: Chain A: Y.23, L.26 Chain D: L.26 No protein-ligand interaction detected (PLIP) HGN.26: 2 residues within 4Å: Chain A: A.34 Chain D: L.37 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 1 residues within 4Å: Chain A: D.21 No protein-ligand interaction detected (PLIP) NA.7: 1 residues within 4Å: Chain A: D.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.21

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.14: 1 residues within 4Å: Chain B: R.36 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.36

6 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)

K.15: 2 residues within 4Å: Chain B: I.4 Ligands: IOD.4 No protein-ligand interaction detected (PLIP) K.16: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) K.17: 1 residues within 4Å: Chain B: M.39 No protein-ligand interaction detected (PLIP) K.18: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) K.27: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) K.28: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.19: 2 residues within 4Å: Chain C: Y.13, V.17 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.13, C:Y.13 GOL.29: 2 residues within 4Å: Chain D: E.6 Ligands: IOD.25 No protein-ligand interaction detected (PLIP)

1 x HGI: MERCURY (II) IODIDE(Non-covalent)

HGI.30: 2 residues within 4Å: Chain B: V.45 Chain C: V.45 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McDougall, M. et al., Reductive power of the archaea right-handed coiled coil nanotube (RHCC-NT) and incorporation of mercury clusters inside protein cages. J. Struct. Biol. (2018)

Release Date

2018-02-07

Peptides

Right Handed Coiled Coil: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Right Handed Coiled Coil

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