SMTL ID : 5vit.5 (5 other biounits)

Crystal structure of a Pseudomonas malonate decarboxylase hetero-tetramer in complex with malonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 9 residues within 4Å: Chain A: N.59, Y.134, F.226, N.292, F.312, R.341, Q.345, G.381, M.385 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.226, A:F.312 Hydrogen bonds: A:N.59, A:Y.134, A:Y.134, A:N.292, A:N.292, A:Q.345, A:G.381 Water bridges: A:N.258 Salt bridges: A:R.341 MLI.2: 9 residues within 4Å: Chain C: N.59, Y.134, F.226, N.292, F.312, R.341, Q.345, G.381, M.385 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.226, C:F.312 Hydrogen bonds: C:N.59, C:N.292, C:Q.345, C:G.381 Water bridges: C:N.258, C:N.258 Salt bridges: C:R.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maderbocus, R. et al., Crystal structure of a Pseudomonas malonate decarboxylase holoenzyme hetero-tetramer. Nat Commun (2017)

Release Date

2017-08-16

Peptides

MdcA: AC
MdcC: BD
MdcD: EG
MdcE: FH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
P

B
C

D
R

E
Y

G
L

F
Z

H
M

MdcA

MdcC

MdcD

MdcE

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