SMTL ID : 5vj1.3 (2 other biounits)

Crystal structure of a Pseudomonas malonate decarboxylase hetero-tetramer in complex with coenzyme A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: N.59, F.226, N.292, F.312, R.341, Q.345 Ligand excluded by PLIP

2 x COA: COENZYME A(Non-covalent)

COA.2: 20 residues within 4Å: Chain E: Q.81, G.82, S.84, G.119, V.121, R.122, L.123, Q.124, F.160, G.161, G.162, R.180, L.183, N.184, G.185, P.186, V.188 Chain F: S.158, M.184, I.192 12 PLIP interactions: 10 interactions with chain E, 1 interactions with chain F, 1 interactions with chain B Hydrophobic interactions: E:F.160, E:F.160, E:F.160 Hydrogen bonds: E:S.84, E:G.119, E:V.121, E:L.123, E:N.184, E:G.185, F:I.192, B:S.25 Salt bridges: E:R.180 COA.3: 21 residues within 4Å: Chain G: Q.81, G.82, S.84, G.119, V.121, R.122, L.123, Q.124, V.157, F.160, G.161, G.162, R.180, N.184, G.185, P.186, V.188 Chain H: S.158, A.183, M.184, I.192 10 PLIP interactions: 9 interactions with chain G, 1 interactions with chain H Hydrophobic interactions: G:V.157, G:F.160, G:F.160 Hydrogen bonds: G:S.84, G:G.119, G:G.119, G:L.123, G:G.185, H:I.192 Salt bridges: G:R.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maderbocus, R. et al., Crystal structure of a Pseudomonas malonate decarboxylase holoenzyme hetero-tetramer. Nat Commun (2017)

Release Date

2017-08-16

Peptides

MdcA: AC
MdcC: BD
MdcD: EG
MdcE: FH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
I

B
C

D
K

E
L

G
D

F
M

H
E

MdcA

MdcC

MdcD

MdcE

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